GO:0006464

GO:0006464

protein modification (annotated genes)

Biological Process

Parent node

GO:0006464	protein modification

This leaf node contains 57 genes

The following 29 of these are used in classification:

	Symbol	Genename	CARCINOID score	other score
36606_at	CPE	carboxypeptidase E	2.2471	-0.2579
34803_at	USP12	ubiquitin specific protease 12	0.8788	-0.1008
34670_at	MAN2B1	mannosidase, alpha, class 2B, member 1	-0.7607	0.0873
35100_at	SIAT8C	sialyltransferase 8C (alpha2,3Galbeta1,4GlcNAcalpha 2,8-sialyltransferase)	0.696	-0.0799
38637_at	LOX	lysyl oxidase	-0.5885	0.0675
34795_at	PLOD2	procollagen-lysine, 2-oxoglutarate 5-dioxygenase (lysine hydroxylase) 2	-0.5003	0.0574
36525_at	FBXL2	F-box and leucine-rich repeat protein 2	0.5	-0.0574
38108_at	PPT2	palmitoyl-protein thioesterase 2	0.4579	-0.0525
40129_at	PRKDC	protein kinase, DNA-activated, catalytic polypeptide	-0.4458	0.0512
33424_at	RPN1	ribophorin I	-0.3231	0.0371
2012_s_at	PRKDC	protein kinase, DNA-activated, catalytic polypeptide	-0.2755	0.0316
1250_at	PRKDC	protein kinase, DNA-activated, catalytic polypeptide	-0.2716	0.0312
40394_at	GGCX	gamma-glutamyl carboxylase	-0.2663	0.0306
36184_at	PLOD	procollagen-lysine, 2-oxoglutarate 5-dioxygenase (lysine hydroxylase, Ehlers-Danlos syndrome type VI)	-0.2465	0.0283
36480_at	PHKA2	phosphorylase kinase, alpha 2 (liver)	0.2105	-0.0242
36811_at	LOXL1	lysyl oxidase-like 1	-0.1962	0.0225
34774_at	PPT1	palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile)	-0.1633	0.0187
37472_at	MANBA	mannosidase, beta A, lysosomal	-0.1502	0.0172
41775_at	ICMT	isoprenylcysteine carboxyl methyltransferase	0.1384	-0.0159
37895_at	SLC35A1	solute carrier family 35 (CMP-sialic acid transporter), member A1	-0.0901	0.0103
38956_at	NAGPA	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	-0.0805	0.0092
39387_at	SEPHS1	selenophosphate synthetase 1	0.0664	-0.0076
38682_at	BAP1	BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase)	-0.0527	0.006
36035_at	GPAA1	GPAA1P anchor attachment protein 1 homolog (yeast)	-0.0512	0.0059
41039_at	TTLL1	tubulin tyrosine ligase-like family, member 1	0.0467	-0.0054
100_g_at	RABGGTA	Rab geranylgeranyltransferase, alpha subunit	-0.0325	0.0037
39801_at	PLOD3	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3	-0.0111	0.0013
37648_at	KIAA0153	KIAA0153 protein	-0.0076	9e-04
517_at	FBXW3	F-box and WD-40 domain protein 3	0.0033	-4e-04

Performance on training data

• Error rate: 0.00735
• Performance: 0.05816
• Redundancy: 6.24418

	Sensitivity	Specificity
CARCINOID	1	0.9918
other	0.9918	1

Performance on test data

• Error rate: 0
• Performance: 0.03272
• Redundancy: 6.30211

	Sensitivity	Specificity
CARCINOID	1	1
other	1	1

Predictions

	Class	CARCINOID	other	Predictionn
CL2001031606AA (testset)	other	7e-05	0.99993	other
CL2001031607AA	other	0.00073	0.99927	other
CL2001031608AA	other	0.00051	0.99949	other
CL2001031609AA	CARCINOID	0.99995	5e-05	CARCINOID
CL2001031611AA	other	0.00798	0.99202	other
CL2001031612AA (testset)	other	0.00042	0.99958	other
CL2001031613AA	other	0	1	other
CL2001031615AA	other	7e-05	0.99993	other
CL2001031616AA	other	5e-05	0.99995	other
CL2001031618AA	other	8e-04	0.9992	other
CL2001031620AA (testset)	other	4e-05	0.99996	other
CL2001031621AA	other	1e-05	0.99999	other
CL2001031622AA (testset)	other	2e-05	0.99998	other
CL2001031625AA	other	0.00171	0.99829	other
CL2001031627AA	other	0.00126	0.99874	other
CL2001031628AA	other	0.00019	0.99981	other
CL2001031629AA	other	0	1	other
CL2001031630AA	other	0.03643	0.96357	other
CL2001031631AA	other	1e-05	0.99999	other
CL2001031632AA	other	8e-05	0.99992	other
CL2001031634AA	other	0.00099	0.99901	other
CL2001031635AA (testset)	other	0.00012	0.99988	other
CL2001031636AA (testset)	other	1e-05	0.99999	other
CL2001032002AA (testset)	other	0.00073	0.99927	other
CL2001032005AA (testset)	other	0.09786	0.90214	other
CL2001032008AA	other	3e-05	0.99997	other
CL2001032009AA (testset)	other	0.15977	0.84023	other
CL2001032010AA	other	0.00043	0.99957	other
CL2001032011AA	other	0.00013	0.99987	other
CL2001032012AA (testset)	other	1e-05	0.99999	other
CL2001032013AA (testset)	other	2e-05	0.99998	other
CL2001032015AA	other	0.00207	0.99793	other
CL2001032016AA	other	4e-05	0.99996	other
CL2001032019AA	other	0.00236	0.99764	other
CL2001032020AA (testset)	other	7e-05	0.99993	other
CL2001032025AA	other	4e-05	0.99996	other
CL2001032026AA	other	0.00015	0.99985	other
CL2001032027AA (testset)	other	3e-05	0.99997	other
CL2001032030AA	other	0.00257	0.99743	other
CL2001032031AA	other	0.00114	0.99886	other
CL2001032032AA (testset)	other	0.00032	0.99968	other
CL2001032034AA	other	0.00027	0.99973	other
CL2001032036AA	other	0	1	other
CL2001032041AA	other	0.00044	0.99956	other
CL2001032043AA	other	0.00166	0.99834	other
CL2001032044AA (testset)	CARCINOID	0.9997	3e-04	CARCINOID
CL2001032045AA	other	0.00098	0.99902	other
CL2001032046AA	other	0.00052	0.99948	other
CL2001032101AA	CARCINOID	0.99654	0.00346	CARCINOID
CL2001032102AA	other	0.00093	0.99907	other
CL2001032103AA	other	6e-05	0.99994	other
CL2001032104AA	other	0.00095	0.99905	other
CL2001032105AA (testset)	other	0.00063	0.99937	other
CL2001032107AA	other	0.29348	0.70652	other
CL2001032108AA	other	0.00037	0.99963	other
CL2001032109AA (testset)	other	0.00075	0.99925	other
CL2001032110AA (testset)	other	0.00111	0.99889	other
CL2001032111AA	other	0.00157	0.99843	other
CL2001032113AA	other	0.90302	0.09698	CARCINOID
CL2001032114AA	other	0.00016	0.99984	other
CL2001032115AA	other	0.00215	0.99785	other
CL2001032116AA	other	0.00334	0.99666	other
CL2001032117AA (testset)	other	0.01661	0.98339	other
CL2001032121AA (testset)	other	0.14845	0.85155	other
CL2001032122AA	other	0.0013	0.9987	other
CL2001032124AA	CARCINOID	0.99022	0.00978	CARCINOID
CL2001032125AA	other	0	1	other
CL2001032127AA (testset)	CARCINOID	0.99289	0.00711	CARCINOID
CL2001032128AA	other	0.00481	0.99519	other
CL2001032129AA	other	2e-05	0.99998	other
CL2001032130AA (testset)	other	3e-05	0.99997	other
CL2001032132AA (testset)	other	0.01826	0.98174	other
CL2001032134AA	other	0.06367	0.93633	other
CL2001032135AA	other	9e-04	0.9991	other
CL2001032136AA	other	1e-05	0.99999	other
CL2001032138AA	other	0.00615	0.99385	other
CL2001032141AA	other	0.00126	0.99874	other
CL2001032142AA (testset)	other	1e-04	0.9999	other
CL2001032144AA	other	1e-05	0.99999	other
CL2001032145AA (testset)	CARCINOID	0.98114	0.01886	CARCINOID
CL2001032147AA	other	0.00028	0.99972	other
CL2001032149AA	other	2e-05	0.99998	other
CL2001032151AA	CARCINOID	0.99998	2e-05	CARCINOID
CL2001032152AA (testset)	CARCINOID	0.99785	0.00215	CARCINOID
CL2001032153AA	other	0.00177	0.99823	other
CL2001032155AA (testset)	other	1e-05	0.99999	other
CL2001032156AA	other	0.00014	0.99986	other
CL2001032202AA (testset)	other	0.00517	0.99483	other
CL2001032206AA	other	0.00055	0.99945	other
CL2001032207AA (testset)	other	3e-05	0.99997	other
CL2001032209AA (testset)	other	1e-05	0.99999	other
CL2001032210AA	CARCINOID	0.99434	0.00566	CARCINOID
CL2001032211AA	other	5e-05	0.99995	other
CL2001032212AA (testset)	other	0.004	0.996	other
CL2001032213AA (testset)	other	8e-05	0.99992	other
CL2001032214AA	other	0.00013	0.99987	other
CL2001032217AA (testset)	other	0.00037	0.99963	other
CL2001032218AA (testset)	other	5e-05	0.99995	other
CL2001032219AA (testset)	CARCINOID	0.99602	0.00398	CARCINOID
CL2001032220AA	other	0.0012	0.9988	other
CL2001032222AA (testset)	other	1e-05	0.99999	other
CL2001032229AA (testset)	other	0.00075	0.99925	other
CL2001032231AA	other	4e-05	0.99996	other
CL2001032232AA	other	0.00017	0.99983	other
CL2001032233AA	other	0	1	other
CL2001032238AA	CARCINOID	0.97758	0.02242	CARCINOID
CL2001032239AA	other	2e-05	0.99998	other
CL2001032240AA	other	1e-05	0.99999	other
CL2001032241AA (testset)	other	1e-05	0.99999	other
CL2001032242AA	other	4e-05	0.99996	other
CL2001032243AA (testset)	other	8e-05	0.99992	other
CL2001032248AA	other	1e-05	0.99999	other
CL2001032249AA	other	0.00813	0.99187	other
CL2001032252AA	other	0.00017	0.99983	other
CL2001032254AA (testset)	other	2e-04	0.9998	other
CL2001032255AA	other	2e-04	0.9998	other
CL2001032256AA (testset)	other	0.00652	0.99348	other
CL2001032259AA	other	2e-05	0.99998	other
CL2001032260AA	other	0.39028	0.60972	other
CL2001032301AA	other	0.00152	0.99848	other
CL2001032304AA (testset)	other	1e-05	0.99999	other
CL2001032305AA (testset)	other	0	1	other
CL2001032306AA	other	0.01547	0.98453	other
CL2001032307AA	other	0.00233	0.99767	other
CL2001032308AA	other	0.00014	0.99986	other
CL2001032309AA	other	7e-05	0.99993	other
CL2001032310AA	other	0.01055	0.98945	other
CL2001032311AA	other	6e-05	0.99994	other
CL2001032312AA	other	0.00015	0.99985	other
CL2001032313AA	other	0.00405	0.99595	other
CL2001032314AA	other	0.00124	0.99876	other
CL2001032316AA (testset)	other	0.00396	0.99604	other
CL2001032601AA	other	1e-05	0.99999	other
CL2001032602AA	other	0.04644	0.95356	other
CL2001032604AA	other	4e-04	0.9996	other
CL2001032607AA	CARCINOID	0.9996	4e-04	CARCINOID
CL2001032608AA	other	7e-05	0.99993	other
CL2001032610AA (testset)	other	3e-05	0.99997	other
CL2001032612AA	other	0.00041	0.99959	other
CL2001032613AA (testset)	other	0.00164	0.99836	other
CL2001032614AA (testset)	other	0.08327	0.91673	other
CL2001032616AA	other	0.00084	0.99916	other
CL2001032617AA (testset)	other	0.00028	0.99972	other
CL2001032620AA (testset)	other	1e-04	0.9999	other
CL2001032625AA	other	0.15891	0.84109	other
CL2001032627AA (testset)	other	2e-05	0.99998	other
CL2001032628AA	other	0.00033	0.99967	other
CL2001032629AA	CARCINOID	0.99866	0.00134	CARCINOID
CL2001032630AA	CARCINOID	0.99789	0.00211	CARCINOID
CL2001032632AA	other	0.00219	0.99781	other
CL2001032638AA (testset)	other	0.00042	0.99958	other
CL2001032640AA	other	0.00031	0.99969	other
CL2001032643AA	other	1e-05	0.99999	other
CL2001032644AA (testset)	other	4e-05	0.99996	other
CL2001032647AA	other	0.00042	0.99958	other
CL2001032701AA	other	0.01476	0.98524	other
CL2001032702AA (testset)	other	4e-05	0.99996	other
CL2001032703AA	other	0	1	other
CL2001032704AA (testset)	other	0.01242	0.98758	other
CL2001032706AA	other	0.00011	0.99989	other
CL2001032709AA	other	1e-05	0.99999	other
CL2001032716AA	other	0.00398	0.99602	other
CL2001032717AA (testset)	other	0.00099	0.99901	other
CL2001032718AA	other	0.00579	0.99421	other
CL2001032719AA (testset)	other	0	1	other
CL2001032720AA	other	0.0264	0.9736	other
CL2001032722AA	CARCINOID	0.99762	0.00238	CARCINOID
CL2001032724AA	other	0.00049	0.99951	other
CL2001032725AA (testset)	other	0.00087	0.99913	other
CL2001032727AA	other	0.00253	0.99747	other
CL2001032729AA (testset)	other	0.00087	0.99913	other
CL2001032730AA	other	0.05251	0.94749	other
CL2001032732AA (testset)	other	0.00016	0.99984	other
CL2001032733AA	other	0.00025	0.99975	other
CL2001032738AA	other	0.00018	0.99982	other
CL2001032742AA	other	0.00058	0.99942	other
CL2001032746AA	other	0.00022	0.99978	other
CL2001032747AA	other	0.00031	0.99969	other
CL2001032833AA	other	0.00066	0.99934	other
CL2001032836AA	other	0	1	other
CL2001032838AA	other	0.00011	0.99989	other
CL2001032839AA	other	0.01184	0.98816	other
CL2001032841AA	other	1e-04	0.9999	other
CL2001032842AA (testset)	other	0.15755	0.84245	other
CL2001032843AA (testset)	other	0.25447	0.74553	other
CL2001032845AA (testset)	other	0.00065	0.99935	other
CL2001032846AA	other	0.00094	0.99906	other
CL2001032847AA	CARCINOID	0.99211	0.00789	CARCINOID
CL2001032848AA (testset)	other	0.00118	0.99882	other
CL2001032850AA	CARCINOID	0.99274	0.00726	CARCINOID
CL2001032853AA (testset)	other	0	1	other
CL2001032854AA	CARCINOID	0.8542	0.1458	CARCINOID
CL2001032856AA	other	0.00018	0.99982	other
CL2001032857AA (testset)	other	0.00121	0.99879	other
CL2001032860AA	CARCINOID	0.99877	0.00123	CARCINOID
CL2001040305AA	other	0.0018	0.9982	other
CL2001040306AA	other	0.00033	0.99967	other
CL2001041708AA	other	6e-04	0.9994	other
CL2001041711AA (testset)	other	6e-04	0.9994	other
CL2001041716AA	other	7e-05	0.99993	other
CL2001042501AA (testset)	CARCINOID	0.9983	0.0017	CARCINOID
CL2001042505AA	other	0.00183	0.99817	other
CL2001042506AA	other	0.00019	0.99981	other