GO:0006281


GO:0006281

DNA repair
(annotated genes)

Biological
Process

Parent node

This leaf node contains 100 genes

The following 40 of these are used in classification:

 SymbolGenenameCARCINOID scoreother score
35852_atCRY2 cryptochrome 2 (photolyase-like)1.841-0.2113
37303_atADPRTL1 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1-0.80170.092
32849_atSMC1L1 SMC1 structural maintenance of chromosomes 1-like 1 (yeast)-0.55210.0634
38908_s_atREV3L REV3-like, catalytic subunit of DNA polymerase zeta (yeast)0.5326-0.0611
37229_atATR ataxia telangiectasia and Rad3 related-0.51930.0596
40412_atPTTG1 pituitary tumor-transforming 1-0.5130.0589
493_atCSNK1D casein kinase 1, delta-0.4870.0559
37277_atGTF2H2 general transcription factor IIH, polypeptide 2, 44kDa0.4748-0.0545
32589_atCHAF1A chromatin assembly factor 1, subunit A (p150)-0.4050.0465
1884_s_atPCNA proliferating cell nuclear antigen-0.37910.0435
1939_atTP53 tumor protein p53 (Li-Fraumeni syndrome)-0.35310.0405
36949_atCSNK1D casein kinase 1, delta0.3511-0.0403
36857_atRAD1 RAD1 homolog (S. pombe)-0.30480.035
35723_atNUDT1 nudix (nucleoside diphosphate linked moiety X)-type motif 1-0.30310.0348
41838_atTREX2 three prime repair exonuclease 2-0.2820.0324
1726_atPOLE polymerase (DNA directed), epsilon-0.26350.0302
40451_atPOLE polymerase (DNA directed), epsilon-0.24020.0276
1544_atBLM Bloom syndrome-0.21510.0247
35758_atRUVBL2 RuvB-like 2 (E. coli)-0.21410.0246
36598_s_atINPPL1 inositol polyphosphate phosphatase-like 10.1866-0.0214
1324_atRAD9A RAD9 homolog A (S. pombe)-0.18020.0207
40450_atPOLE polymerase (DNA directed), epsilon-0.17510.0201
33145_atFANCA Fanconi anemia, complementation group A-0.17370.0199
38481_atRPA1 replication protein A1, 70kDa-0.14930.0171
32158_atRAD9A RAD9 homolog A (S. pombe)-0.14720.0169
39664_atCKN1 Cockayne syndrome 1 (classical)0.1394-0.016
1824_s_atPCNA proliferating cell nuclear antigen-0.10330.0119
36634_atBTG2 BTG family, member 20.0975-0.0112
38782_atGTF2H1 general transcription factor IIH, polypeptide 1, 62kDa-0.09720.0112
39670_atADPRTL3 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 3-0.09610.011
1462_s_atPOLD1 polymerase (DNA directed), delta 1, catalytic subunit 125kDa-0.08350.0096
653_atRFC5 replication factor C (activator 1) 5, 36.5kDa-0.06490.0074
38148_atCRY1 cryptochrome 1 (photolyase-like)-0.05760.0066
37094_atXRCC3 X-ray repair complementing defective repair in Chinese hamster cells 3-0.05420.0062
1969_s_atCDK7 cyclin-dependent kinase 7 (MO15 homolog, Xenopus laevis, cdk-activating kinase)-0.04320.005
33380_atPOLS polymerase (DNA directed) sigma-0.04070.0047
39651_atRECQL4 RecQ protein-like 4-0.02470.0028
1878_g_atERCC1 excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence)-0.0078e-04
33317_atCDK7 cyclin-dependent kinase 7 (MO15 homolog, Xenopus laevis, cdk-activating kinase)-0.00142e-04
1863_s_atATM ataxia telangiectasia mutated (includes complementation groups A, C and D)-1e-040

Performance on training data

 SensitivitySpecificity
CARCINOID11
other11

Performance on test data

 SensitivitySpecificity
CARCINOID0.833331
other10.83333

Predictions

 ClassCARCINOIDotherPredictionn
CL2001031606AA (testset)other01 other
CL2001031607AAother2e-050.99998 other
CL2001031608AAother0.02320.9768 other
CL2001031609AACARCINOID0.962650.03735 CARCINOID
CL2001031611AAother4e-050.99996 other
CL2001031612AA (testset)other01 other
CL2001031613AAother0.000140.99986 other
CL2001031615AAother0.002310.99769 other
CL2001031616AAother4e-050.99996 other
CL2001031618AAother0.045360.95464 other
CL2001031620AA (testset)other01 other
CL2001031621AAother01 other
CL2001031622AA (testset)other01 other
CL2001031625AAother0.104440.89556 other
CL2001031627AAother0.006460.99354 other
CL2001031628AAother0.000930.99907 other
CL2001031629AAother0.000160.99984 other
CL2001031630AAother0.003290.99671 other
CL2001031631AAother9e-050.99991 other
CL2001031632AAother0.000290.99971 other
CL2001031634AAother0.018670.98133 other
CL2001031635AA (testset)other0.001570.99843 other
CL2001031636AA (testset)other01 other
CL2001032002AA (testset)other0.145490.85451 other
CL2001032005AA (testset)other0.000420.99958 other
CL2001032008AAother9e-050.99991 other
CL2001032009AA (testset)other6e-050.99994 other
CL2001032010AAother0.020630.97937 other
CL2001032011AAother0.011750.98825 other
CL2001032012AA (testset)other0.002820.99718 other
CL2001032013AA (testset)other0.049170.95083 other
CL2001032015AAother0.005630.99437 other
CL2001032016AAother0.002020.99798 other
CL2001032019AAother0.002360.99764 other
CL2001032020AA (testset)other0.000350.99965 other
CL2001032025AAother0.015840.98416 other
CL2001032026AAother0.004850.99515 other
CL2001032027AA (testset)other5e-050.99995 other
CL2001032030AAother1e-050.99999 other
CL2001032031AAother0.003680.99632 other
CL2001032032AA (testset)other0.01590.9841 other
CL2001032034AAother0.008390.99161 other
CL2001032036AAother01 other
CL2001032041AAother0.022740.97726 other
CL2001032043AAother0.095580.90442 other
CL2001032044AA (testset)CARCINOID0.997820.00218 CARCINOID
CL2001032045AAother0.072560.92744 other
CL2001032046AAother0.133740.86626 other
CL2001032101AACARCINOID0.99590.0041 CARCINOID
CL2001032102AAother0.08730.9127 other
CL2001032103AAother0.019020.98098 other
CL2001032104AAother0.000370.99963 other
CL2001032105AA (testset)other0.000770.99923 other
CL2001032107AAother4e-050.99996 other
CL2001032108AAother0.02260.9774 other
CL2001032109AA (testset)other0.180960.81904 other
CL2001032110AA (testset)other0.006930.99307 other
CL2001032111AAother0.000440.99956 other
CL2001032113AAother0.002160.99784 other
CL2001032114AAother0.000510.99949 other
CL2001032115AAother0.046070.95393 other
CL2001032116AAother0.013080.98692 other
CL2001032117AA (testset)other4e-050.99996 other
CL2001032121AA (testset)other4e-050.99996 other
CL2001032122AAother01 other
CL2001032124AACARCINOID0.997880.00212 CARCINOID
CL2001032125AAother0.000310.99969 other
CL2001032127AA (testset)CARCINOID0.499340.50066 other
CL2001032128AAother0.053750.94625 other
CL2001032129AAother1e-050.99999 other
CL2001032130AA (testset)other5e-050.99995 other
CL2001032132AA (testset)other0.010360.98964 other
CL2001032134AAother7e-050.99993 other
CL2001032135AAother9e-050.99991 other
CL2001032136AAother0.000130.99987 other
CL2001032138AAother1e-040.9999 other
CL2001032141AAother0.006580.99342 other
CL2001032142AA (testset)other0.000310.99969 other
CL2001032144AAother1e-050.99999 other
CL2001032145AA (testset)CARCINOID0.999630.00037 CARCINOID
CL2001032147AAother0.035720.96428 other
CL2001032149AAother8e-050.99992 other
CL2001032151AACARCINOID0.995120.00488 CARCINOID
CL2001032152AA (testset)CARCINOID0.968280.03172 CARCINOID
CL2001032153AAother1e-040.9999 other
CL2001032155AA (testset)other7e-050.99993 other
CL2001032156AAother0.000170.99983 other
CL2001032202AA (testset)other0.129690.87031 other
CL2001032206AAother0.016610.98339 other
CL2001032207AA (testset)other1e-050.99999 other
CL2001032209AA (testset)other01 other
CL2001032210AACARCINOID0.998290.00171 CARCINOID
CL2001032211AAother0.000180.99982 other
CL2001032212AA (testset)other0.010250.98975 other
CL2001032213AA (testset)other0.001290.99871 other
CL2001032214AAother0.002030.99797 other
CL2001032217AA (testset)other0.000150.99985 other
CL2001032218AA (testset)other0.000180.99982 other
CL2001032219AA (testset)CARCINOID0.996150.00385 CARCINOID
CL2001032220AAother0.191240.80876 other
CL2001032222AA (testset)other01 other
CL2001032229AA (testset)other0.009110.99089 other
CL2001032231AAother0.000360.99964 other
CL2001032232AAother0.000220.99978 other
CL2001032233AAother0.000540.99946 other
CL2001032238AACARCINOID0.995320.00468 CARCINOID
CL2001032239AAother1e-050.99999 other
CL2001032240AAother1e-050.99999 other
CL2001032241AA (testset)other0.000390.99961 other
CL2001032242AAother4e-050.99996 other
CL2001032243AA (testset)other0.001140.99886 other
CL2001032248AAother2e-050.99998 other
CL2001032249AAother0.004480.99552 other
CL2001032252AAother01 other
CL2001032254AA (testset)other0.000960.99904 other
CL2001032255AAother7e-050.99993 other
CL2001032256AA (testset)other0.000310.99969 other
CL2001032259AAother0.007960.99204 other
CL2001032260AAother0.000150.99985 other
CL2001032301AAother6e-050.99994 other
CL2001032304AA (testset)other0.003160.99684 other
CL2001032305AA (testset)other1e-050.99999 other
CL2001032306AAother7e-050.99993 other
CL2001032307AAother0.000670.99933 other
CL2001032308AAother0.009090.99091 other
CL2001032309AAother0.009950.99005 other
CL2001032310AAother0.042390.95761 other
CL2001032311AAother01 other
CL2001032312AAother0.00260.9974 other
CL2001032313AAother0.004370.99563 other
CL2001032314AAother0.005830.99417 other
CL2001032316AA (testset)other7e-050.99993 other
CL2001032601AAother0.000180.99982 other
CL2001032602AAother0.006230.99377 other
CL2001032604AAother0.001360.99864 other
CL2001032607AACARCINOID0.992660.00734 CARCINOID
CL2001032608AAother4e-050.99996 other
CL2001032610AA (testset)other5e-050.99995 other
CL2001032612AAother0.020760.97924 other
CL2001032613AA (testset)other0.001290.99871 other
CL2001032614AA (testset)other0.000130.99987 other
CL2001032616AAother0.07440.9256 other
CL2001032617AA (testset)other0.001080.99892 other
CL2001032620AA (testset)other0.004090.99591 other
CL2001032625AAother0.017790.98221 other
CL2001032627AA (testset)other3e-050.99997 other
CL2001032628AAother0.003050.99695 other
CL2001032629AACARCINOID0.991130.00887 CARCINOID
CL2001032630AACARCINOID0.999060.00094 CARCINOID
CL2001032632AAother0.000710.99929 other
CL2001032638AA (testset)other1e-050.99999 other
CL2001032640AAother0.260650.73935 other
CL2001032643AAother1e-040.9999 other
CL2001032644AA (testset)other01 other
CL2001032647AAother0.001120.99888 other
CL2001032701AAother0.004390.99561 other
CL2001032702AA (testset)other0.000270.99973 other
CL2001032703AAother1e-050.99999 other
CL2001032704AA (testset)other4e-050.99996 other
CL2001032706AAother0.000430.99957 other
CL2001032709AAother0.0020.998 other
CL2001032716AAother0.001490.99851 other
CL2001032717AA (testset)other0.000830.99917 other
CL2001032718AAother0.008170.99183 other
CL2001032719AA (testset)other01 other
CL2001032720AAother7e-050.99993 other
CL2001032722AACARCINOID0.999880.00012 CARCINOID
CL2001032724AAother0.024710.97529 other
CL2001032725AA (testset)other0.229790.77021 other
CL2001032727AAother0.293680.70632 other
CL2001032729AA (testset)other1e-040.9999 other
CL2001032730AAother0.000850.99915 other
CL2001032732AA (testset)other1e-050.99999 other
CL2001032733AAother0.007930.99207 other
CL2001032738AAother1e-050.99999 other
CL2001032742AAother5e-050.99995 other
CL2001032746AAother0.000130.99987 other
CL2001032747AAother0.0030.997 other
CL2001032833AAother0.054260.94574 other
CL2001032836AAother01 other
CL2001032838AAother0.004190.99581 other
CL2001032839AAother4e-040.9996 other
CL2001032841AAother0.029690.97031 other
CL2001032842AA (testset)other2e-050.99998 other
CL2001032843AA (testset)other0.000410.99959 other
CL2001032845AA (testset)other0.012870.98713 other
CL2001032846AAother0.032820.96718 other
CL2001032847AACARCINOID0.999860.00014 CARCINOID
CL2001032848AA (testset)other0.060790.93921 other
CL2001032850AACARCINOID0.999770.00023 CARCINOID
CL2001032853AA (testset)other5e-050.99995 other
CL2001032854AACARCINOID0.715290.28471 CARCINOID
CL2001032856AAother0.001660.99834 other
CL2001032857AA (testset)other0.005760.99424 other
CL2001032860AACARCINOID0.987990.01201 CARCINOID
CL2001040305AAother3e-040.9997 other
CL2001040306AAother0.057660.94234 other
CL2001041708AAother0.000880.99912 other
CL2001041711AA (testset)other0.033090.96691 other
CL2001041716AAother2e-040.9998 other
CL2001042501AA (testset)CARCINOID0.99928e-04 CARCINOID
CL2001042505AAother0.001960.99804 other
CL2001042506AAother0.004360.99564 other

 


Generated by StAM on Tue Sep 7 17:20:49 2004