GO:0006281

GO:0006281

DNA repair (annotated genes)

Biological Process

Parent node

GO:0006281	DNA repair

This leaf node contains 100 genes

The following 40 of these are used in classification:

	Symbol	Genename	CARCINOID score	other score
35852_at	CRY2	cryptochrome 2 (photolyase-like)	1.841	-0.2113
37303_at	ADPRTL1	ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1	-0.8017	0.092
32849_at	SMC1L1	SMC1 structural maintenance of chromosomes 1-like 1 (yeast)	-0.5521	0.0634
38908_s_at	REV3L	REV3-like, catalytic subunit of DNA polymerase zeta (yeast)	0.5326	-0.0611
37229_at	ATR	ataxia telangiectasia and Rad3 related	-0.5193	0.0596
40412_at	PTTG1	pituitary tumor-transforming 1	-0.513	0.0589
493_at	CSNK1D	casein kinase 1, delta	-0.487	0.0559
37277_at	GTF2H2	general transcription factor IIH, polypeptide 2, 44kDa	0.4748	-0.0545
32589_at	CHAF1A	chromatin assembly factor 1, subunit A (p150)	-0.405	0.0465
1884_s_at	PCNA	proliferating cell nuclear antigen	-0.3791	0.0435
1939_at	TP53	tumor protein p53 (Li-Fraumeni syndrome)	-0.3531	0.0405
36949_at	CSNK1D	casein kinase 1, delta	0.3511	-0.0403
36857_at	RAD1	RAD1 homolog (S. pombe)	-0.3048	0.035
35723_at	NUDT1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	-0.3031	0.0348
41838_at	TREX2	three prime repair exonuclease 2	-0.282	0.0324
1726_at	POLE	polymerase (DNA directed), epsilon	-0.2635	0.0302
40451_at	POLE	polymerase (DNA directed), epsilon	-0.2402	0.0276
1544_at	BLM	Bloom syndrome	-0.2151	0.0247
35758_at	RUVBL2	RuvB-like 2 (E. coli)	-0.2141	0.0246
36598_s_at	INPPL1	inositol polyphosphate phosphatase-like 1	0.1866	-0.0214
1324_at	RAD9A	RAD9 homolog A (S. pombe)	-0.1802	0.0207
40450_at	POLE	polymerase (DNA directed), epsilon	-0.1751	0.0201
33145_at	FANCA	Fanconi anemia, complementation group A	-0.1737	0.0199
38481_at	RPA1	replication protein A1, 70kDa	-0.1493	0.0171
32158_at	RAD9A	RAD9 homolog A (S. pombe)	-0.1472	0.0169
39664_at	CKN1	Cockayne syndrome 1 (classical)	0.1394	-0.016
1824_s_at	PCNA	proliferating cell nuclear antigen	-0.1033	0.0119
36634_at	BTG2	BTG family, member 2	0.0975	-0.0112
38782_at	GTF2H1	general transcription factor IIH, polypeptide 1, 62kDa	-0.0972	0.0112
39670_at	ADPRTL3	ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 3	-0.0961	0.011
1462_s_at	POLD1	polymerase (DNA directed), delta 1, catalytic subunit 125kDa	-0.0835	0.0096
653_at	RFC5	replication factor C (activator 1) 5, 36.5kDa	-0.0649	0.0074
38148_at	CRY1	cryptochrome 1 (photolyase-like)	-0.0576	0.0066
37094_at	XRCC3	X-ray repair complementing defective repair in Chinese hamster cells 3	-0.0542	0.0062
1969_s_at	CDK7	cyclin-dependent kinase 7 (MO15 homolog, Xenopus laevis, cdk-activating kinase)	-0.0432	0.005
33380_at	POLS	polymerase (DNA directed) sigma	-0.0407	0.0047
39651_at	RECQL4	RecQ protein-like 4	-0.0247	0.0028
1878_g_at	ERCC1	excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence)	-0.007	8e-04
33317_at	CDK7	cyclin-dependent kinase 7 (MO15 homolog, Xenopus laevis, cdk-activating kinase)	-0.0014	2e-04
1863_s_at	ATM	ataxia telangiectasia mutated (includes complementation groups A, C and D)	-1e-04	0

Performance on training data

• Error rate: 0
• Performance: 0.03962
• Redundancy: 5.68682

	Sensitivity	Specificity
CARCINOID	1	1
other	1	1

Performance on test data

• Error rate: 0.01493
• Performance: 0.05453
• Redundancy: 6.35052

	Sensitivity	Specificity
CARCINOID	0.83333	1
other	1	0.83333

Predictions

	Class	CARCINOID	other	Predictionn
CL2001031606AA (testset)	other	0	1	other
CL2001031607AA	other	2e-05	0.99998	other
CL2001031608AA	other	0.0232	0.9768	other
CL2001031609AA	CARCINOID	0.96265	0.03735	CARCINOID
CL2001031611AA	other	4e-05	0.99996	other
CL2001031612AA (testset)	other	0	1	other
CL2001031613AA	other	0.00014	0.99986	other
CL2001031615AA	other	0.00231	0.99769	other
CL2001031616AA	other	4e-05	0.99996	other
CL2001031618AA	other	0.04536	0.95464	other
CL2001031620AA (testset)	other	0	1	other
CL2001031621AA	other	0	1	other
CL2001031622AA (testset)	other	0	1	other
CL2001031625AA	other	0.10444	0.89556	other
CL2001031627AA	other	0.00646	0.99354	other
CL2001031628AA	other	0.00093	0.99907	other
CL2001031629AA	other	0.00016	0.99984	other
CL2001031630AA	other	0.00329	0.99671	other
CL2001031631AA	other	9e-05	0.99991	other
CL2001031632AA	other	0.00029	0.99971	other
CL2001031634AA	other	0.01867	0.98133	other
CL2001031635AA (testset)	other	0.00157	0.99843	other
CL2001031636AA (testset)	other	0	1	other
CL2001032002AA (testset)	other	0.14549	0.85451	other
CL2001032005AA (testset)	other	0.00042	0.99958	other
CL2001032008AA	other	9e-05	0.99991	other
CL2001032009AA (testset)	other	6e-05	0.99994	other
CL2001032010AA	other	0.02063	0.97937	other
CL2001032011AA	other	0.01175	0.98825	other
CL2001032012AA (testset)	other	0.00282	0.99718	other
CL2001032013AA (testset)	other	0.04917	0.95083	other
CL2001032015AA	other	0.00563	0.99437	other
CL2001032016AA	other	0.00202	0.99798	other
CL2001032019AA	other	0.00236	0.99764	other
CL2001032020AA (testset)	other	0.00035	0.99965	other
CL2001032025AA	other	0.01584	0.98416	other
CL2001032026AA	other	0.00485	0.99515	other
CL2001032027AA (testset)	other	5e-05	0.99995	other
CL2001032030AA	other	1e-05	0.99999	other
CL2001032031AA	other	0.00368	0.99632	other
CL2001032032AA (testset)	other	0.0159	0.9841	other
CL2001032034AA	other	0.00839	0.99161	other
CL2001032036AA	other	0	1	other
CL2001032041AA	other	0.02274	0.97726	other
CL2001032043AA	other	0.09558	0.90442	other
CL2001032044AA (testset)	CARCINOID	0.99782	0.00218	CARCINOID
CL2001032045AA	other	0.07256	0.92744	other
CL2001032046AA	other	0.13374	0.86626	other
CL2001032101AA	CARCINOID	0.9959	0.0041	CARCINOID
CL2001032102AA	other	0.0873	0.9127	other
CL2001032103AA	other	0.01902	0.98098	other
CL2001032104AA	other	0.00037	0.99963	other
CL2001032105AA (testset)	other	0.00077	0.99923	other
CL2001032107AA	other	4e-05	0.99996	other
CL2001032108AA	other	0.0226	0.9774	other
CL2001032109AA (testset)	other	0.18096	0.81904	other
CL2001032110AA (testset)	other	0.00693	0.99307	other
CL2001032111AA	other	0.00044	0.99956	other
CL2001032113AA	other	0.00216	0.99784	other
CL2001032114AA	other	0.00051	0.99949	other
CL2001032115AA	other	0.04607	0.95393	other
CL2001032116AA	other	0.01308	0.98692	other
CL2001032117AA (testset)	other	4e-05	0.99996	other
CL2001032121AA (testset)	other	4e-05	0.99996	other
CL2001032122AA	other	0	1	other
CL2001032124AA	CARCINOID	0.99788	0.00212	CARCINOID
CL2001032125AA	other	0.00031	0.99969	other
CL2001032127AA (testset)	CARCINOID	0.49934	0.50066	other
CL2001032128AA	other	0.05375	0.94625	other
CL2001032129AA	other	1e-05	0.99999	other
CL2001032130AA (testset)	other	5e-05	0.99995	other
CL2001032132AA (testset)	other	0.01036	0.98964	other
CL2001032134AA	other	7e-05	0.99993	other
CL2001032135AA	other	9e-05	0.99991	other
CL2001032136AA	other	0.00013	0.99987	other
CL2001032138AA	other	1e-04	0.9999	other
CL2001032141AA	other	0.00658	0.99342	other
CL2001032142AA (testset)	other	0.00031	0.99969	other
CL2001032144AA	other	1e-05	0.99999	other
CL2001032145AA (testset)	CARCINOID	0.99963	0.00037	CARCINOID
CL2001032147AA	other	0.03572	0.96428	other
CL2001032149AA	other	8e-05	0.99992	other
CL2001032151AA	CARCINOID	0.99512	0.00488	CARCINOID
CL2001032152AA (testset)	CARCINOID	0.96828	0.03172	CARCINOID
CL2001032153AA	other	1e-04	0.9999	other
CL2001032155AA (testset)	other	7e-05	0.99993	other
CL2001032156AA	other	0.00017	0.99983	other
CL2001032202AA (testset)	other	0.12969	0.87031	other
CL2001032206AA	other	0.01661	0.98339	other
CL2001032207AA (testset)	other	1e-05	0.99999	other
CL2001032209AA (testset)	other	0	1	other
CL2001032210AA	CARCINOID	0.99829	0.00171	CARCINOID
CL2001032211AA	other	0.00018	0.99982	other
CL2001032212AA (testset)	other	0.01025	0.98975	other
CL2001032213AA (testset)	other	0.00129	0.99871	other
CL2001032214AA	other	0.00203	0.99797	other
CL2001032217AA (testset)	other	0.00015	0.99985	other
CL2001032218AA (testset)	other	0.00018	0.99982	other
CL2001032219AA (testset)	CARCINOID	0.99615	0.00385	CARCINOID
CL2001032220AA	other	0.19124	0.80876	other
CL2001032222AA (testset)	other	0	1	other
CL2001032229AA (testset)	other	0.00911	0.99089	other
CL2001032231AA	other	0.00036	0.99964	other
CL2001032232AA	other	0.00022	0.99978	other
CL2001032233AA	other	0.00054	0.99946	other
CL2001032238AA	CARCINOID	0.99532	0.00468	CARCINOID
CL2001032239AA	other	1e-05	0.99999	other
CL2001032240AA	other	1e-05	0.99999	other
CL2001032241AA (testset)	other	0.00039	0.99961	other
CL2001032242AA	other	4e-05	0.99996	other
CL2001032243AA (testset)	other	0.00114	0.99886	other
CL2001032248AA	other	2e-05	0.99998	other
CL2001032249AA	other	0.00448	0.99552	other
CL2001032252AA	other	0	1	other
CL2001032254AA (testset)	other	0.00096	0.99904	other
CL2001032255AA	other	7e-05	0.99993	other
CL2001032256AA (testset)	other	0.00031	0.99969	other
CL2001032259AA	other	0.00796	0.99204	other
CL2001032260AA	other	0.00015	0.99985	other
CL2001032301AA	other	6e-05	0.99994	other
CL2001032304AA (testset)	other	0.00316	0.99684	other
CL2001032305AA (testset)	other	1e-05	0.99999	other
CL2001032306AA	other	7e-05	0.99993	other
CL2001032307AA	other	0.00067	0.99933	other
CL2001032308AA	other	0.00909	0.99091	other
CL2001032309AA	other	0.00995	0.99005	other
CL2001032310AA	other	0.04239	0.95761	other
CL2001032311AA	other	0	1	other
CL2001032312AA	other	0.0026	0.9974	other
CL2001032313AA	other	0.00437	0.99563	other
CL2001032314AA	other	0.00583	0.99417	other
CL2001032316AA (testset)	other	7e-05	0.99993	other
CL2001032601AA	other	0.00018	0.99982	other
CL2001032602AA	other	0.00623	0.99377	other
CL2001032604AA	other	0.00136	0.99864	other
CL2001032607AA	CARCINOID	0.99266	0.00734	CARCINOID
CL2001032608AA	other	4e-05	0.99996	other
CL2001032610AA (testset)	other	5e-05	0.99995	other
CL2001032612AA	other	0.02076	0.97924	other
CL2001032613AA (testset)	other	0.00129	0.99871	other
CL2001032614AA (testset)	other	0.00013	0.99987	other
CL2001032616AA	other	0.0744	0.9256	other
CL2001032617AA (testset)	other	0.00108	0.99892	other
CL2001032620AA (testset)	other	0.00409	0.99591	other
CL2001032625AA	other	0.01779	0.98221	other
CL2001032627AA (testset)	other	3e-05	0.99997	other
CL2001032628AA	other	0.00305	0.99695	other
CL2001032629AA	CARCINOID	0.99113	0.00887	CARCINOID
CL2001032630AA	CARCINOID	0.99906	0.00094	CARCINOID
CL2001032632AA	other	0.00071	0.99929	other
CL2001032638AA (testset)	other	1e-05	0.99999	other
CL2001032640AA	other	0.26065	0.73935	other
CL2001032643AA	other	1e-04	0.9999	other
CL2001032644AA (testset)	other	0	1	other
CL2001032647AA	other	0.00112	0.99888	other
CL2001032701AA	other	0.00439	0.99561	other
CL2001032702AA (testset)	other	0.00027	0.99973	other
CL2001032703AA	other	1e-05	0.99999	other
CL2001032704AA (testset)	other	4e-05	0.99996	other
CL2001032706AA	other	0.00043	0.99957	other
CL2001032709AA	other	0.002	0.998	other
CL2001032716AA	other	0.00149	0.99851	other
CL2001032717AA (testset)	other	0.00083	0.99917	other
CL2001032718AA	other	0.00817	0.99183	other
CL2001032719AA (testset)	other	0	1	other
CL2001032720AA	other	7e-05	0.99993	other
CL2001032722AA	CARCINOID	0.99988	0.00012	CARCINOID
CL2001032724AA	other	0.02471	0.97529	other
CL2001032725AA (testset)	other	0.22979	0.77021	other
CL2001032727AA	other	0.29368	0.70632	other
CL2001032729AA (testset)	other	1e-04	0.9999	other
CL2001032730AA	other	0.00085	0.99915	other
CL2001032732AA (testset)	other	1e-05	0.99999	other
CL2001032733AA	other	0.00793	0.99207	other
CL2001032738AA	other	1e-05	0.99999	other
CL2001032742AA	other	5e-05	0.99995	other
CL2001032746AA	other	0.00013	0.99987	other
CL2001032747AA	other	0.003	0.997	other
CL2001032833AA	other	0.05426	0.94574	other
CL2001032836AA	other	0	1	other
CL2001032838AA	other	0.00419	0.99581	other
CL2001032839AA	other	4e-04	0.9996	other
CL2001032841AA	other	0.02969	0.97031	other
CL2001032842AA (testset)	other	2e-05	0.99998	other
CL2001032843AA (testset)	other	0.00041	0.99959	other
CL2001032845AA (testset)	other	0.01287	0.98713	other
CL2001032846AA	other	0.03282	0.96718	other
CL2001032847AA	CARCINOID	0.99986	0.00014	CARCINOID
CL2001032848AA (testset)	other	0.06079	0.93921	other
CL2001032850AA	CARCINOID	0.99977	0.00023	CARCINOID
CL2001032853AA (testset)	other	5e-05	0.99995	other
CL2001032854AA	CARCINOID	0.71529	0.28471	CARCINOID
CL2001032856AA	other	0.00166	0.99834	other
CL2001032857AA (testset)	other	0.00576	0.99424	other
CL2001032860AA	CARCINOID	0.98799	0.01201	CARCINOID
CL2001040305AA	other	3e-04	0.9997	other
CL2001040306AA	other	0.05766	0.94234	other
CL2001041708AA	other	0.00088	0.99912	other
CL2001041711AA (testset)	other	0.03309	0.96691	other
CL2001041716AA	other	2e-04	0.9998	other
CL2001042501AA (testset)	CARCINOID	0.9992	8e-04	CARCINOID
CL2001042505AA	other	0.00196	0.99804	other
CL2001042506AA	other	0.00436	0.99564	other