GO:0006281 | DNA repair | Biological Process |
GO:0006281 | DNA repair |
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The following 40 of these are used in classification:
Symbol | Genename | CARCINOID score | other score | |
---|---|---|---|---|
35852_at | CRY2 | cryptochrome 2 (photolyase-like) | 1.841 | -0.2113 |
37303_at | ADPRTL1 | ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 | -0.8017 | 0.092 |
32849_at | SMC1L1 | SMC1 structural maintenance of chromosomes 1-like 1 (yeast) | -0.5521 | 0.0634 |
38908_s_at | REV3L | REV3-like, catalytic subunit of DNA polymerase zeta (yeast) | 0.5326 | -0.0611 |
37229_at | ATR | ataxia telangiectasia and Rad3 related | -0.5193 | 0.0596 |
40412_at | PTTG1 | pituitary tumor-transforming 1 | -0.513 | 0.0589 |
493_at | CSNK1D | casein kinase 1, delta | -0.487 | 0.0559 |
37277_at | GTF2H2 | general transcription factor IIH, polypeptide 2, 44kDa | 0.4748 | -0.0545 |
32589_at | CHAF1A | chromatin assembly factor 1, subunit A (p150) | -0.405 | 0.0465 |
1884_s_at | PCNA | proliferating cell nuclear antigen | -0.3791 | 0.0435 |
1939_at | TP53 | tumor protein p53 (Li-Fraumeni syndrome) | -0.3531 | 0.0405 |
36949_at | CSNK1D | casein kinase 1, delta | 0.3511 | -0.0403 |
36857_at | RAD1 | RAD1 homolog (S. pombe) | -0.3048 | 0.035 |
35723_at | NUDT1 | nudix (nucleoside diphosphate linked moiety X)-type motif 1 | -0.3031 | 0.0348 |
41838_at | TREX2 | three prime repair exonuclease 2 | -0.282 | 0.0324 |
1726_at | POLE | polymerase (DNA directed), epsilon | -0.2635 | 0.0302 |
40451_at | POLE | polymerase (DNA directed), epsilon | -0.2402 | 0.0276 |
1544_at | BLM | Bloom syndrome | -0.2151 | 0.0247 |
35758_at | RUVBL2 | RuvB-like 2 (E. coli) | -0.2141 | 0.0246 |
36598_s_at | INPPL1 | inositol polyphosphate phosphatase-like 1 | 0.1866 | -0.0214 |
1324_at | RAD9A | RAD9 homolog A (S. pombe) | -0.1802 | 0.0207 |
40450_at | POLE | polymerase (DNA directed), epsilon | -0.1751 | 0.0201 |
33145_at | FANCA | Fanconi anemia, complementation group A | -0.1737 | 0.0199 |
38481_at | RPA1 | replication protein A1, 70kDa | -0.1493 | 0.0171 |
32158_at | RAD9A | RAD9 homolog A (S. pombe) | -0.1472 | 0.0169 |
39664_at | CKN1 | Cockayne syndrome 1 (classical) | 0.1394 | -0.016 |
1824_s_at | PCNA | proliferating cell nuclear antigen | -0.1033 | 0.0119 |
36634_at | BTG2 | BTG family, member 2 | 0.0975 | -0.0112 |
38782_at | GTF2H1 | general transcription factor IIH, polypeptide 1, 62kDa | -0.0972 | 0.0112 |
39670_at | ADPRTL3 | ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 3 | -0.0961 | 0.011 |
1462_s_at | POLD1 | polymerase (DNA directed), delta 1, catalytic subunit 125kDa | -0.0835 | 0.0096 |
653_at | RFC5 | replication factor C (activator 1) 5, 36.5kDa | -0.0649 | 0.0074 |
38148_at | CRY1 | cryptochrome 1 (photolyase-like) | -0.0576 | 0.0066 |
37094_at | XRCC3 | X-ray repair complementing defective repair in Chinese hamster cells 3 | -0.0542 | 0.0062 |
1969_s_at | CDK7 | cyclin-dependent kinase 7 (MO15 homolog, Xenopus laevis, cdk-activating kinase) | -0.0432 | 0.005 |
33380_at | POLS | polymerase (DNA directed) sigma | -0.0407 | 0.0047 |
39651_at | RECQL4 | RecQ protein-like 4 | -0.0247 | 0.0028 |
1878_g_at | ERCC1 | excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence) | -0.007 | 8e-04 |
33317_at | CDK7 | cyclin-dependent kinase 7 (MO15 homolog, Xenopus laevis, cdk-activating kinase) | -0.0014 | 2e-04 |
1863_s_at | ATM | ataxia telangiectasia mutated (includes complementation groups A, C and D) | -1e-04 | 0 |
Sensitivity | Specificity | |
---|---|---|
CARCINOID | 1 | 1 |
other | 1 | 1 |
Sensitivity | Specificity | |
---|---|---|
CARCINOID | 0.83333 | 1 |
other | 1 | 0.83333 |
Class | CARCINOID | other | Predictionn | |
---|---|---|---|---|
CL2001031606AA (testset) | other | 0 | 1 | other |
CL2001031607AA | other | 2e-05 | 0.99998 | other |
CL2001031608AA | other | 0.0232 | 0.9768 | other |
CL2001031609AA | CARCINOID | 0.96265 | 0.03735 | CARCINOID |
CL2001031611AA | other | 4e-05 | 0.99996 | other |
CL2001031612AA (testset) | other | 0 | 1 | other |
CL2001031613AA | other | 0.00014 | 0.99986 | other |
CL2001031615AA | other | 0.00231 | 0.99769 | other |
CL2001031616AA | other | 4e-05 | 0.99996 | other |
CL2001031618AA | other | 0.04536 | 0.95464 | other |
CL2001031620AA (testset) | other | 0 | 1 | other |
CL2001031621AA | other | 0 | 1 | other |
CL2001031622AA (testset) | other | 0 | 1 | other |
CL2001031625AA | other | 0.10444 | 0.89556 | other |
CL2001031627AA | other | 0.00646 | 0.99354 | other |
CL2001031628AA | other | 0.00093 | 0.99907 | other |
CL2001031629AA | other | 0.00016 | 0.99984 | other |
CL2001031630AA | other | 0.00329 | 0.99671 | other |
CL2001031631AA | other | 9e-05 | 0.99991 | other |
CL2001031632AA | other | 0.00029 | 0.99971 | other |
CL2001031634AA | other | 0.01867 | 0.98133 | other |
CL2001031635AA (testset) | other | 0.00157 | 0.99843 | other |
CL2001031636AA (testset) | other | 0 | 1 | other |
CL2001032002AA (testset) | other | 0.14549 | 0.85451 | other |
CL2001032005AA (testset) | other | 0.00042 | 0.99958 | other |
CL2001032008AA | other | 9e-05 | 0.99991 | other |
CL2001032009AA (testset) | other | 6e-05 | 0.99994 | other |
CL2001032010AA | other | 0.02063 | 0.97937 | other |
CL2001032011AA | other | 0.01175 | 0.98825 | other |
CL2001032012AA (testset) | other | 0.00282 | 0.99718 | other |
CL2001032013AA (testset) | other | 0.04917 | 0.95083 | other |
CL2001032015AA | other | 0.00563 | 0.99437 | other |
CL2001032016AA | other | 0.00202 | 0.99798 | other |
CL2001032019AA | other | 0.00236 | 0.99764 | other |
CL2001032020AA (testset) | other | 0.00035 | 0.99965 | other |
CL2001032025AA | other | 0.01584 | 0.98416 | other |
CL2001032026AA | other | 0.00485 | 0.99515 | other |
CL2001032027AA (testset) | other | 5e-05 | 0.99995 | other |
CL2001032030AA | other | 1e-05 | 0.99999 | other |
CL2001032031AA | other | 0.00368 | 0.99632 | other |
CL2001032032AA (testset) | other | 0.0159 | 0.9841 | other |
CL2001032034AA | other | 0.00839 | 0.99161 | other |
CL2001032036AA | other | 0 | 1 | other |
CL2001032041AA | other | 0.02274 | 0.97726 | other |
CL2001032043AA | other | 0.09558 | 0.90442 | other |
CL2001032044AA (testset) | CARCINOID | 0.99782 | 0.00218 | CARCINOID |
CL2001032045AA | other | 0.07256 | 0.92744 | other |
CL2001032046AA | other | 0.13374 | 0.86626 | other |
CL2001032101AA | CARCINOID | 0.9959 | 0.0041 | CARCINOID |
CL2001032102AA | other | 0.0873 | 0.9127 | other |
CL2001032103AA | other | 0.01902 | 0.98098 | other |
CL2001032104AA | other | 0.00037 | 0.99963 | other |
CL2001032105AA (testset) | other | 0.00077 | 0.99923 | other |
CL2001032107AA | other | 4e-05 | 0.99996 | other |
CL2001032108AA | other | 0.0226 | 0.9774 | other |
CL2001032109AA (testset) | other | 0.18096 | 0.81904 | other |
CL2001032110AA (testset) | other | 0.00693 | 0.99307 | other |
CL2001032111AA | other | 0.00044 | 0.99956 | other |
CL2001032113AA | other | 0.00216 | 0.99784 | other |
CL2001032114AA | other | 0.00051 | 0.99949 | other |
CL2001032115AA | other | 0.04607 | 0.95393 | other |
CL2001032116AA | other | 0.01308 | 0.98692 | other |
CL2001032117AA (testset) | other | 4e-05 | 0.99996 | other |
CL2001032121AA (testset) | other | 4e-05 | 0.99996 | other |
CL2001032122AA | other | 0 | 1 | other |
CL2001032124AA | CARCINOID | 0.99788 | 0.00212 | CARCINOID |
CL2001032125AA | other | 0.00031 | 0.99969 | other |
CL2001032127AA (testset) | CARCINOID | 0.49934 | 0.50066 | other |
CL2001032128AA | other | 0.05375 | 0.94625 | other |
CL2001032129AA | other | 1e-05 | 0.99999 | other |
CL2001032130AA (testset) | other | 5e-05 | 0.99995 | other |
CL2001032132AA (testset) | other | 0.01036 | 0.98964 | other |
CL2001032134AA | other | 7e-05 | 0.99993 | other |
CL2001032135AA | other | 9e-05 | 0.99991 | other |
CL2001032136AA | other | 0.00013 | 0.99987 | other |
CL2001032138AA | other | 1e-04 | 0.9999 | other |
CL2001032141AA | other | 0.00658 | 0.99342 | other |
CL2001032142AA (testset) | other | 0.00031 | 0.99969 | other |
CL2001032144AA | other | 1e-05 | 0.99999 | other |
CL2001032145AA (testset) | CARCINOID | 0.99963 | 0.00037 | CARCINOID |
CL2001032147AA | other | 0.03572 | 0.96428 | other |
CL2001032149AA | other | 8e-05 | 0.99992 | other |
CL2001032151AA | CARCINOID | 0.99512 | 0.00488 | CARCINOID |
CL2001032152AA (testset) | CARCINOID | 0.96828 | 0.03172 | CARCINOID |
CL2001032153AA | other | 1e-04 | 0.9999 | other |
CL2001032155AA (testset) | other | 7e-05 | 0.99993 | other |
CL2001032156AA | other | 0.00017 | 0.99983 | other |
CL2001032202AA (testset) | other | 0.12969 | 0.87031 | other |
CL2001032206AA | other | 0.01661 | 0.98339 | other |
CL2001032207AA (testset) | other | 1e-05 | 0.99999 | other |
CL2001032209AA (testset) | other | 0 | 1 | other |
CL2001032210AA | CARCINOID | 0.99829 | 0.00171 | CARCINOID |
CL2001032211AA | other | 0.00018 | 0.99982 | other |
CL2001032212AA (testset) | other | 0.01025 | 0.98975 | other |
CL2001032213AA (testset) | other | 0.00129 | 0.99871 | other |
CL2001032214AA | other | 0.00203 | 0.99797 | other |
CL2001032217AA (testset) | other | 0.00015 | 0.99985 | other |
CL2001032218AA (testset) | other | 0.00018 | 0.99982 | other |
CL2001032219AA (testset) | CARCINOID | 0.99615 | 0.00385 | CARCINOID |
CL2001032220AA | other | 0.19124 | 0.80876 | other |
CL2001032222AA (testset) | other | 0 | 1 | other |
CL2001032229AA (testset) | other | 0.00911 | 0.99089 | other |
CL2001032231AA | other | 0.00036 | 0.99964 | other |
CL2001032232AA | other | 0.00022 | 0.99978 | other |
CL2001032233AA | other | 0.00054 | 0.99946 | other |
CL2001032238AA | CARCINOID | 0.99532 | 0.00468 | CARCINOID |
CL2001032239AA | other | 1e-05 | 0.99999 | other |
CL2001032240AA | other | 1e-05 | 0.99999 | other |
CL2001032241AA (testset) | other | 0.00039 | 0.99961 | other |
CL2001032242AA | other | 4e-05 | 0.99996 | other |
CL2001032243AA (testset) | other | 0.00114 | 0.99886 | other |
CL2001032248AA | other | 2e-05 | 0.99998 | other |
CL2001032249AA | other | 0.00448 | 0.99552 | other |
CL2001032252AA | other | 0 | 1 | other |
CL2001032254AA (testset) | other | 0.00096 | 0.99904 | other |
CL2001032255AA | other | 7e-05 | 0.99993 | other |
CL2001032256AA (testset) | other | 0.00031 | 0.99969 | other |
CL2001032259AA | other | 0.00796 | 0.99204 | other |
CL2001032260AA | other | 0.00015 | 0.99985 | other |
CL2001032301AA | other | 6e-05 | 0.99994 | other |
CL2001032304AA (testset) | other | 0.00316 | 0.99684 | other |
CL2001032305AA (testset) | other | 1e-05 | 0.99999 | other |
CL2001032306AA | other | 7e-05 | 0.99993 | other |
CL2001032307AA | other | 0.00067 | 0.99933 | other |
CL2001032308AA | other | 0.00909 | 0.99091 | other |
CL2001032309AA | other | 0.00995 | 0.99005 | other |
CL2001032310AA | other | 0.04239 | 0.95761 | other |
CL2001032311AA | other | 0 | 1 | other |
CL2001032312AA | other | 0.0026 | 0.9974 | other |
CL2001032313AA | other | 0.00437 | 0.99563 | other |
CL2001032314AA | other | 0.00583 | 0.99417 | other |
CL2001032316AA (testset) | other | 7e-05 | 0.99993 | other |
CL2001032601AA | other | 0.00018 | 0.99982 | other |
CL2001032602AA | other | 0.00623 | 0.99377 | other |
CL2001032604AA | other | 0.00136 | 0.99864 | other |
CL2001032607AA | CARCINOID | 0.99266 | 0.00734 | CARCINOID |
CL2001032608AA | other | 4e-05 | 0.99996 | other |
CL2001032610AA (testset) | other | 5e-05 | 0.99995 | other |
CL2001032612AA | other | 0.02076 | 0.97924 | other |
CL2001032613AA (testset) | other | 0.00129 | 0.99871 | other |
CL2001032614AA (testset) | other | 0.00013 | 0.99987 | other |
CL2001032616AA | other | 0.0744 | 0.9256 | other |
CL2001032617AA (testset) | other | 0.00108 | 0.99892 | other |
CL2001032620AA (testset) | other | 0.00409 | 0.99591 | other |
CL2001032625AA | other | 0.01779 | 0.98221 | other |
CL2001032627AA (testset) | other | 3e-05 | 0.99997 | other |
CL2001032628AA | other | 0.00305 | 0.99695 | other |
CL2001032629AA | CARCINOID | 0.99113 | 0.00887 | CARCINOID |
CL2001032630AA | CARCINOID | 0.99906 | 0.00094 | CARCINOID |
CL2001032632AA | other | 0.00071 | 0.99929 | other |
CL2001032638AA (testset) | other | 1e-05 | 0.99999 | other |
CL2001032640AA | other | 0.26065 | 0.73935 | other |
CL2001032643AA | other | 1e-04 | 0.9999 | other |
CL2001032644AA (testset) | other | 0 | 1 | other |
CL2001032647AA | other | 0.00112 | 0.99888 | other |
CL2001032701AA | other | 0.00439 | 0.99561 | other |
CL2001032702AA (testset) | other | 0.00027 | 0.99973 | other |
CL2001032703AA | other | 1e-05 | 0.99999 | other |
CL2001032704AA (testset) | other | 4e-05 | 0.99996 | other |
CL2001032706AA | other | 0.00043 | 0.99957 | other |
CL2001032709AA | other | 0.002 | 0.998 | other |
CL2001032716AA | other | 0.00149 | 0.99851 | other |
CL2001032717AA (testset) | other | 0.00083 | 0.99917 | other |
CL2001032718AA | other | 0.00817 | 0.99183 | other |
CL2001032719AA (testset) | other | 0 | 1 | other |
CL2001032720AA | other | 7e-05 | 0.99993 | other |
CL2001032722AA | CARCINOID | 0.99988 | 0.00012 | CARCINOID |
CL2001032724AA | other | 0.02471 | 0.97529 | other |
CL2001032725AA (testset) | other | 0.22979 | 0.77021 | other |
CL2001032727AA | other | 0.29368 | 0.70632 | other |
CL2001032729AA (testset) | other | 1e-04 | 0.9999 | other |
CL2001032730AA | other | 0.00085 | 0.99915 | other |
CL2001032732AA (testset) | other | 1e-05 | 0.99999 | other |
CL2001032733AA | other | 0.00793 | 0.99207 | other |
CL2001032738AA | other | 1e-05 | 0.99999 | other |
CL2001032742AA | other | 5e-05 | 0.99995 | other |
CL2001032746AA | other | 0.00013 | 0.99987 | other |
CL2001032747AA | other | 0.003 | 0.997 | other |
CL2001032833AA | other | 0.05426 | 0.94574 | other |
CL2001032836AA | other | 0 | 1 | other |
CL2001032838AA | other | 0.00419 | 0.99581 | other |
CL2001032839AA | other | 4e-04 | 0.9996 | other |
CL2001032841AA | other | 0.02969 | 0.97031 | other |
CL2001032842AA (testset) | other | 2e-05 | 0.99998 | other |
CL2001032843AA (testset) | other | 0.00041 | 0.99959 | other |
CL2001032845AA (testset) | other | 0.01287 | 0.98713 | other |
CL2001032846AA | other | 0.03282 | 0.96718 | other |
CL2001032847AA | CARCINOID | 0.99986 | 0.00014 | CARCINOID |
CL2001032848AA (testset) | other | 0.06079 | 0.93921 | other |
CL2001032850AA | CARCINOID | 0.99977 | 0.00023 | CARCINOID |
CL2001032853AA (testset) | other | 5e-05 | 0.99995 | other |
CL2001032854AA | CARCINOID | 0.71529 | 0.28471 | CARCINOID |
CL2001032856AA | other | 0.00166 | 0.99834 | other |
CL2001032857AA (testset) | other | 0.00576 | 0.99424 | other |
CL2001032860AA | CARCINOID | 0.98799 | 0.01201 | CARCINOID |
CL2001040305AA | other | 3e-04 | 0.9997 | other |
CL2001040306AA | other | 0.05766 | 0.94234 | other |
CL2001041708AA | other | 0.00088 | 0.99912 | other |
CL2001041711AA (testset) | other | 0.03309 | 0.96691 | other |
CL2001041716AA | other | 2e-04 | 0.9998 | other |
CL2001042501AA (testset) | CARCINOID | 0.9992 | 8e-04 | CARCINOID |
CL2001042505AA | other | 0.00196 | 0.99804 | other |
CL2001042506AA | other | 0.00436 | 0.99564 | other |