GO:0000122 | negative regulation of transcription from Pol II promoter | Biological Process |
| GO:0006357 | regulation of transcription from Pol II promoter |
|---|---|
| GO:0045892 | negative regulation of transcription, DNA-dependent |
The following 51 of these are used in classification:
| Symbol | Genename | CARCINOID score | other score | |
|---|---|---|---|---|
| 41388_at | MEIS2 | Meis1, myeloid ecotropic viral integration site 1 homolog 2 (mouse) | 1.6553 | -0.1899 |
| 2035_s_at | ENO1 | enolase 1, (alpha) | -1.6395 | 0.1881 |
| 39839_at | CSDA | cold shock domain protein A | -1.5076 | 0.173 |
| 37505_at | NR0B2 | nuclear receptor subfamily 0, group B, member 2 | 1.2931 | -0.1484 |
| 40091_at | BCL6 | B-cell CLL/lymphoma 6 (zinc finger protein 51) | -1.207 | 0.1385 |
| 36412_s_at | IRF7 | interferon regulatory factor 7 | -0.9698 | 0.1113 |
| 38374_at | TIEG | TGFB inducible early growth response | -0.7551 | 0.0866 |
| 38317_at | TCEAL1 | transcription elongation factor A (SII)-like 1 | 0.7276 | -0.0835 |
| 643_at | NR0B2 | nuclear receptor subfamily 0, group B, member 2 | 0.7065 | -0.0811 |
| 34355_at | MECP2 | methyl CpG binding protein 2 (Rett syndrome) | 0.6877 | -0.0789 |
| 1341_at | SPI1 | spleen focus forming virus (SFFV) proviral integration oncogene spi1 | -0.6765 | 0.0776 |
| 33865_at | BS69 | adenovirus 5 E1A binding protein | 0.635 | -0.0729 |
| 38640_at | ZT86 | zinc finger protein | -0.6032 | 0.0692 |
| 274_at | ZNF148 | zinc finger protein 148 (pHZ-52) | 0.5213 | -0.0598 |
| 37333_at | DNMT1 | DNA (cytosine-5-)-methyltransferase 1 | -0.4945 | 0.0567 |
| 224_at | TIEG | TGFB inducible early growth response | -0.4567 | 0.0524 |
| 33864_at | BS69 | adenovirus 5 E1A binding protein | 0.4352 | -0.0499 |
| 40621_at | PAWR | PRKC, apoptosis, WT1, regulator | -0.4178 | 0.0479 |
| 41466_s_at | ZNF148 | zinc finger protein 148 (pHZ-52) | 0.4154 | -0.0477 |
| 38639_at | MXD4 | MAX dimerization protein 4 | 0.3696 | -0.0424 |
| 33873_at | TCFL1 | transcription factor-like 1 | -0.365 | 0.0419 |
| 31779_s_at | PRDM1 | PR domain containing 1, with ZNF domain | -0.3643 | 0.0418 |
| 41465_at | ZNF148 | zinc finger protein 148 (pHZ-52) | 0.3331 | -0.0382 |
| 35475_at | ZNF177 | zinc finger protein 177 | 0.2994 | -0.0344 |
| 33439_at | TCF8 | transcription factor 8 (represses interleukin 2 expression) | -0.2945 | 0.0338 |
| 31906_at | HSBP1 | heat shock factor binding protein 1 | -0.294 | 0.0337 |
| 2028_s_at | E2F1 | E2F transcription factor 1 | -0.2914 | 0.0334 |
| 32941_at | ICSBP1 | interferon consensus sequence binding protein 1 | -0.2757 | 0.0316 |
| 36669_at | FOSB | FBJ murine osteosarcoma viral oncogene homolog B | -0.1954 | 0.0224 |
| 31823_at | CUTL1 | cut-like 1, CCAAT displacement protein (Drosophila) | -0.1604 | 0.0184 |
| 33440_at | TCF8 | transcription factor 8 (represses interleukin 2 expression) | 0.1552 | -0.0178 |
| 211_at | DR1 | down-regulator of transcription 1, TBP-binding (negative cofactor 2) | -0.1548 | 0.0178 |
| 32621_at | DR1 | down-regulator of transcription 1, TBP-binding (negative cofactor 2) | -0.1528 | 0.0175 |
| 38288_at | SNAI2 | snail homolog 2 (Drosophila) | -0.1489 | 0.0171 |
| 35019_at | ZNF254 | zinc finger protein 254 | -0.097 | 0.0111 |
| 1900_at | RB1 | retinoblastoma 1 (including osteosarcoma) | 0.0957 | -0.011 |
| 1905_s_at | RB1 | retinoblastoma 1 (including osteosarcoma) | -0.0839 | 0.0096 |
| 40328_at | TWIST1 | twist homolog 1 (acrocephalosyndactyly 3; Saethre-Chotzen syndrome) (Drosophila) | -0.0836 | 0.0096 |
| 39943_at | ORC2L | origin recognition complex, subunit 2-like (yeast) | 0.0778 | -0.0089 |
| 32443_at | ZNF157 | zinc finger protein 157 (HZF22) | 0.0705 | -0.0081 |
| 40944_at | TIEG2 | TGFB inducible early growth response 2 | -0.0621 | 0.0071 |
| 31822_at | CUTL1 | cut-like 1, CCAAT displacement protein (Drosophila) | -0.0579 | 0.0066 |
| 1219_at | IRF2 | interferon regulatory factor 2 | -0.0501 | 0.0058 |
| 1322_at | E2F1 | E2F transcription factor 1 | 0.0469 | -0.0054 |
| 978_at | BCL6 | B-cell CLL/lymphoma 6 (zinc finger protein 51) | 0.0446 | -0.0051 |
| 38603_at | ZNF136 | zinc finger protein 136 (clone pHZ-20) | 0.0383 | -0.0044 |
| 34551_at | POU4F2 | POU domain, class 4, transcription factor 2 | 0.0307 | -0.0035 |
| 1571_f_at | RB1 | retinoblastoma 1 (including osteosarcoma) | 0.0283 | -0.0032 |
| 1220_g_at | IRF2 | interferon regulatory factor 2 | -0.0159 | 0.0018 |
| 1672_f_at | RB1 | retinoblastoma 1 (including osteosarcoma) | -0.0097 | 0.0011 |
| 32267_at | ZNF345 | zinc finger protein 345 | 0.0067 | -8e-04 |
| Sensitivity | Specificity | |
|---|---|---|
| CARCINOID | 1 | 1 |
| other | 1 | 1 |
| Sensitivity | Specificity | |
|---|---|---|
| CARCINOID | 1 | 0.98361 |
| other | 0.98361 | 1 |
| Class | CARCINOID | other | Predictionn | |
|---|---|---|---|---|
| CL2001031606AA (testset) | other | 0 | 1 | other |
| CL2001031607AA | other | 0 | 1 | other |
| CL2001031608AA | other | 1e-05 | 0.99999 | other |
| CL2001031609AA | CARCINOID | 1 | 0 | CARCINOID |
| CL2001031611AA | other | 0 | 1 | other |
| CL2001031612AA (testset) | other | 1e-05 | 0.99999 | other |
| CL2001031613AA | other | 0 | 1 | other |
| CL2001031615AA | other | 1e-05 | 0.99999 | other |
| CL2001031616AA | other | 0 | 1 | other |
| CL2001031618AA | other | 6e-04 | 0.9994 | other |
| CL2001031620AA (testset) | other | 0 | 1 | other |
| CL2001031621AA | other | 0 | 1 | other |
| CL2001031622AA (testset) | other | 0 | 1 | other |
| CL2001031625AA | other | 0 | 1 | other |
| CL2001031627AA | other | 0 | 1 | other |
| CL2001031628AA | other | 0 | 1 | other |
| CL2001031629AA | other | 0 | 1 | other |
| CL2001031630AA | other | 2e-05 | 0.99998 | other |
| CL2001031631AA | other | 0 | 1 | other |
| CL2001031632AA | other | 0 | 1 | other |
| CL2001031634AA | other | 0 | 1 | other |
| CL2001031635AA (testset) | other | 0 | 1 | other |
| CL2001031636AA (testset) | other | 0 | 1 | other |
| CL2001032002AA (testset) | other | 0.0036 | 0.9964 | other |
| CL2001032005AA (testset) | other | 0 | 1 | other |
| CL2001032008AA | other | 0 | 1 | other |
| CL2001032009AA (testset) | other | 0 | 1 | other |
| CL2001032010AA | other | 0 | 1 | other |
| CL2001032011AA | other | 0 | 1 | other |
| CL2001032012AA (testset) | other | 0 | 1 | other |
| CL2001032013AA (testset) | other | 4e-05 | 0.99996 | other |
| CL2001032015AA | other | 0 | 1 | other |
| CL2001032016AA | other | 0 | 1 | other |
| CL2001032019AA | other | 0 | 1 | other |
| CL2001032020AA (testset) | other | 0 | 1 | other |
| CL2001032025AA | other | 2e-05 | 0.99998 | other |
| CL2001032026AA | other | 0 | 1 | other |
| CL2001032027AA (testset) | other | 0 | 1 | other |
| CL2001032030AA | other | 1e-05 | 0.99999 | other |
| CL2001032031AA | other | 1e-05 | 0.99999 | other |
| CL2001032032AA (testset) | other | 5e-05 | 0.99995 | other |
| CL2001032034AA | other | 0.00015 | 0.99985 | other |
| CL2001032036AA | other | 0.1554 | 0.8446 | other |
| CL2001032041AA | other | 1e-05 | 0.99999 | other |
| CL2001032043AA | other | 0.00097 | 0.99903 | other |
| CL2001032044AA (testset) | CARCINOID | 0.99999 | 1e-05 | CARCINOID |
| CL2001032045AA | other | 0.00055 | 0.99945 | other |
| CL2001032046AA | other | 0.00012 | 0.99988 | other |
| CL2001032101AA | CARCINOID | 0.99926 | 0.00074 | CARCINOID |
| CL2001032102AA | other | 1e-05 | 0.99999 | other |
| CL2001032103AA | other | 1e-05 | 0.99999 | other |
| CL2001032104AA | other | 0 | 1 | other |
| CL2001032105AA (testset) | other | 1e-05 | 0.99999 | other |
| CL2001032107AA | other | 0 | 1 | other |
| CL2001032108AA | other | 0 | 1 | other |
| CL2001032109AA (testset) | other | 0.00854 | 0.99146 | other |
| CL2001032110AA (testset) | other | 0 | 1 | other |
| CL2001032111AA | other | 0 | 1 | other |
| CL2001032113AA | other | 0.00184 | 0.99816 | other |
| CL2001032114AA | other | 0 | 1 | other |
| CL2001032115AA | other | 0.01799 | 0.98201 | other |
| CL2001032116AA | other | 0.00016 | 0.99984 | other |
| CL2001032117AA (testset) | other | 0 | 1 | other |
| CL2001032121AA (testset) | other | 0.70502 | 0.29498 | CARCINOID |
| CL2001032122AA | other | 0 | 1 | other |
| CL2001032124AA | CARCINOID | 0.99973 | 0.00027 | CARCINOID |
| CL2001032125AA | other | 0 | 1 | other |
| CL2001032127AA (testset) | CARCINOID | 1 | 0 | CARCINOID |
| CL2001032128AA | other | 2e-05 | 0.99998 | other |
| CL2001032129AA | other | 0 | 1 | other |
| CL2001032130AA (testset) | other | 0 | 1 | other |
| CL2001032132AA (testset) | other | 6e-05 | 0.99994 | other |
| CL2001032134AA | other | 0 | 1 | other |
| CL2001032135AA | other | 0 | 1 | other |
| CL2001032136AA | other | 0 | 1 | other |
| CL2001032138AA | other | 0 | 1 | other |
| CL2001032141AA | other | 1e-05 | 0.99999 | other |
| CL2001032142AA (testset) | other | 0 | 1 | other |
| CL2001032144AA | other | 0 | 1 | other |
| CL2001032145AA (testset) | CARCINOID | 0.99987 | 0.00013 | CARCINOID |
| CL2001032147AA | other | 0 | 1 | other |
| CL2001032149AA | other | 0 | 1 | other |
| CL2001032151AA | CARCINOID | 1 | 0 | CARCINOID |
| CL2001032152AA (testset) | CARCINOID | 1 | 0 | CARCINOID |
| CL2001032153AA | other | 2e-05 | 0.99998 | other |
| CL2001032155AA (testset) | other | 0 | 1 | other |
| CL2001032156AA | other | 1e-05 | 0.99999 | other |
| CL2001032202AA (testset) | other | 4e-05 | 0.99996 | other |
| CL2001032206AA | other | 0 | 1 | other |
| CL2001032207AA (testset) | other | 0 | 1 | other |
| CL2001032209AA (testset) | other | 0 | 1 | other |
| CL2001032210AA | CARCINOID | 1 | 0 | CARCINOID |
| CL2001032211AA | other | 0 | 1 | other |
| CL2001032212AA (testset) | other | 0.00055 | 0.99945 | other |
| CL2001032213AA (testset) | other | 4e-05 | 0.99996 | other |
| CL2001032214AA | other | 0 | 1 | other |
| CL2001032217AA (testset) | other | 0.06233 | 0.93767 | other |
| CL2001032218AA (testset) | other | 0 | 1 | other |
| CL2001032219AA (testset) | CARCINOID | 0.95656 | 0.04344 | CARCINOID |
| CL2001032220AA | other | 7e-05 | 0.99993 | other |
| CL2001032222AA (testset) | other | 0 | 1 | other |
| CL2001032229AA (testset) | other | 5e-05 | 0.99995 | other |
| CL2001032231AA | other | 0 | 1 | other |
| CL2001032232AA | other | 1e-05 | 0.99999 | other |
| CL2001032233AA | other | 0 | 1 | other |
| CL2001032238AA | CARCINOID | 0.99977 | 0.00023 | CARCINOID |
| CL2001032239AA | other | 0 | 1 | other |
| CL2001032240AA | other | 0 | 1 | other |
| CL2001032241AA (testset) | other | 0 | 1 | other |
| CL2001032242AA | other | 0 | 1 | other |
| CL2001032243AA (testset) | other | 0 | 1 | other |
| CL2001032248AA | other | 0 | 1 | other |
| CL2001032249AA | other | 0 | 1 | other |
| CL2001032252AA | other | 0 | 1 | other |
| CL2001032254AA (testset) | other | 0 | 1 | other |
| CL2001032255AA | other | 0 | 1 | other |
| CL2001032256AA (testset) | other | 0 | 1 | other |
| CL2001032259AA | other | 0 | 1 | other |
| CL2001032260AA | other | 0.01171 | 0.98829 | other |
| CL2001032301AA | other | 0 | 1 | other |
| CL2001032304AA (testset) | other | 0 | 1 | other |
| CL2001032305AA (testset) | other | 0 | 1 | other |
| CL2001032306AA | other | 1e-05 | 0.99999 | other |
| CL2001032307AA | other | 0 | 1 | other |
| CL2001032308AA | other | 2e-05 | 0.99998 | other |
| CL2001032309AA | other | 0 | 1 | other |
| CL2001032310AA | other | 0.00984 | 0.99016 | other |
| CL2001032311AA | other | 0 | 1 | other |
| CL2001032312AA | other | 0 | 1 | other |
| CL2001032313AA | other | 2e-05 | 0.99998 | other |
| CL2001032314AA | other | 8e-05 | 0.99992 | other |
| CL2001032316AA (testset) | other | 0 | 1 | other |
| CL2001032601AA | other | 0 | 1 | other |
| CL2001032602AA | other | 8e-05 | 0.99992 | other |
| CL2001032604AA | other | 0 | 1 | other |
| CL2001032607AA | CARCINOID | 1 | 0 | CARCINOID |
| CL2001032608AA | other | 0 | 1 | other |
| CL2001032610AA (testset) | other | 0 | 1 | other |
| CL2001032612AA | other | 0 | 1 | other |
| CL2001032613AA (testset) | other | 0 | 1 | other |
| CL2001032614AA (testset) | other | 1e-05 | 0.99999 | other |
| CL2001032616AA | other | 0.00096 | 0.99904 | other |
| CL2001032617AA (testset) | other | 1e-05 | 0.99999 | other |
| CL2001032620AA (testset) | other | 0 | 1 | other |
| CL2001032625AA | other | 0.0021 | 0.9979 | other |
| CL2001032627AA (testset) | other | 0 | 1 | other |
| CL2001032628AA | other | 0 | 1 | other |
| CL2001032629AA | CARCINOID | 0.99999 | 1e-05 | CARCINOID |
| CL2001032630AA | CARCINOID | 0.99775 | 0.00225 | CARCINOID |
| CL2001032632AA | other | 0.01767 | 0.98233 | other |
| CL2001032638AA (testset) | other | 1e-05 | 0.99999 | other |
| CL2001032640AA | other | 1e-05 | 0.99999 | other |
| CL2001032643AA | other | 0 | 1 | other |
| CL2001032644AA (testset) | other | 0 | 1 | other |
| CL2001032647AA | other | 0 | 1 | other |
| CL2001032701AA | other | 0 | 1 | other |
| CL2001032702AA (testset) | other | 0 | 1 | other |
| CL2001032703AA | other | 0 | 1 | other |
| CL2001032704AA (testset) | other | 0 | 1 | other |
| CL2001032706AA | other | 0 | 1 | other |
| CL2001032709AA | other | 0 | 1 | other |
| CL2001032716AA | other | 0 | 1 | other |
| CL2001032717AA (testset) | other | 0.00015 | 0.99985 | other |
| CL2001032718AA | other | 0.00041 | 0.99959 | other |
| CL2001032719AA (testset) | other | 0 | 1 | other |
| CL2001032720AA | other | 0.15357 | 0.84643 | other |
| CL2001032722AA | CARCINOID | 1 | 0 | CARCINOID |
| CL2001032724AA | other | 0.00026 | 0.99974 | other |
| CL2001032725AA (testset) | other | 0.01483 | 0.98517 | other |
| CL2001032727AA | other | 3e-05 | 0.99997 | other |
| CL2001032729AA (testset) | other | 0 | 1 | other |
| CL2001032730AA | other | 0 | 1 | other |
| CL2001032732AA (testset) | other | 2e-05 | 0.99998 | other |
| CL2001032733AA | other | 0 | 1 | other |
| CL2001032738AA | other | 0 | 1 | other |
| CL2001032742AA | other | 0 | 1 | other |
| CL2001032746AA | other | 0 | 1 | other |
| CL2001032747AA | other | 1e-05 | 0.99999 | other |
| CL2001032833AA | other | 9e-05 | 0.99991 | other |
| CL2001032836AA | other | 0 | 1 | other |
| CL2001032838AA | other | 0 | 1 | other |
| CL2001032839AA | other | 0 | 1 | other |
| CL2001032841AA | other | 0 | 1 | other |
| CL2001032842AA (testset) | other | 0.00017 | 0.99983 | other |
| CL2001032843AA (testset) | other | 1e-05 | 0.99999 | other |
| CL2001032845AA (testset) | other | 0.00111 | 0.99889 | other |
| CL2001032846AA | other | 0 | 1 | other |
| CL2001032847AA | CARCINOID | 0.99892 | 0.00108 | CARCINOID |
| CL2001032848AA (testset) | other | 0 | 1 | other |
| CL2001032850AA | CARCINOID | 0.99999 | 1e-05 | CARCINOID |
| CL2001032853AA (testset) | other | 0 | 1 | other |
| CL2001032854AA | CARCINOID | 0.99999 | 1e-05 | CARCINOID |
| CL2001032856AA | other | 0 | 1 | other |
| CL2001032857AA (testset) | other | 2e-05 | 0.99998 | other |
| CL2001032860AA | CARCINOID | 0.99997 | 3e-05 | CARCINOID |
| CL2001040305AA | other | 6e-05 | 0.99994 | other |
| CL2001040306AA | other | 8e-05 | 0.99992 | other |
| CL2001041708AA | other | 0 | 1 | other |
| CL2001041711AA (testset) | other | 2e-05 | 0.99998 | other |
| CL2001041716AA | other | 0 | 1 | other |
| CL2001042501AA (testset) | CARCINOID | 1 | 0 | CARCINOID |
| CL2001042505AA | other | 0.00585 | 0.99415 | other |
| CL2001042506AA | other | 0 | 1 | other |