GO:0000122


GO:0000122

negative regulation of transcription from Pol II promoter
(annotated genes)

Biological
Process

Parent nodes

This leaf node contains 66 genes

The following 51 of these are used in classification:

 SymbolGenenameCARCINOID scoreother score
41388_atMEIS2 Meis1, myeloid ecotropic viral integration site 1 homolog 2 (mouse)1.6553-0.1899
2035_s_atENO1 enolase 1, (alpha)-1.63950.1881
39839_atCSDA cold shock domain protein A-1.50760.173
37505_atNR0B2 nuclear receptor subfamily 0, group B, member 21.2931-0.1484
40091_atBCL6 B-cell CLL/lymphoma 6 (zinc finger protein 51)-1.2070.1385
36412_s_atIRF7 interferon regulatory factor 7-0.96980.1113
38374_atTIEG TGFB inducible early growth response-0.75510.0866
38317_atTCEAL1 transcription elongation factor A (SII)-like 10.7276-0.0835
643_atNR0B2 nuclear receptor subfamily 0, group B, member 20.7065-0.0811
34355_atMECP2 methyl CpG binding protein 2 (Rett syndrome)0.6877-0.0789
1341_atSPI1 spleen focus forming virus (SFFV) proviral integration oncogene spi1-0.67650.0776
33865_atBS69 adenovirus 5 E1A binding protein0.635-0.0729
38640_atZT86 zinc finger protein-0.60320.0692
274_atZNF148 zinc finger protein 148 (pHZ-52)0.5213-0.0598
37333_atDNMT1 DNA (cytosine-5-)-methyltransferase 1-0.49450.0567
224_atTIEG TGFB inducible early growth response-0.45670.0524
33864_atBS69 adenovirus 5 E1A binding protein0.4352-0.0499
40621_atPAWR PRKC, apoptosis, WT1, regulator-0.41780.0479
41466_s_atZNF148 zinc finger protein 148 (pHZ-52)0.4154-0.0477
38639_atMXD4 MAX dimerization protein 40.3696-0.0424
33873_atTCFL1 transcription factor-like 1-0.3650.0419
31779_s_atPRDM1 PR domain containing 1, with ZNF domain-0.36430.0418
41465_atZNF148 zinc finger protein 148 (pHZ-52)0.3331-0.0382
35475_atZNF177 zinc finger protein 1770.2994-0.0344
33439_atTCF8 transcription factor 8 (represses interleukin 2 expression)-0.29450.0338
31906_atHSBP1 heat shock factor binding protein 1-0.2940.0337
2028_s_atE2F1 E2F transcription factor 1-0.29140.0334
32941_atICSBP1 interferon consensus sequence binding protein 1-0.27570.0316
36669_atFOSB FBJ murine osteosarcoma viral oncogene homolog B-0.19540.0224
31823_atCUTL1 cut-like 1, CCAAT displacement protein (Drosophila)-0.16040.0184
33440_atTCF8 transcription factor 8 (represses interleukin 2 expression)0.1552-0.0178
211_atDR1 down-regulator of transcription 1, TBP-binding (negative cofactor 2)-0.15480.0178
32621_atDR1 down-regulator of transcription 1, TBP-binding (negative cofactor 2)-0.15280.0175
38288_atSNAI2 snail homolog 2 (Drosophila)-0.14890.0171
35019_atZNF254 zinc finger protein 254-0.0970.0111
1900_atRB1 retinoblastoma 1 (including osteosarcoma)0.0957-0.011
1905_s_atRB1 retinoblastoma 1 (including osteosarcoma)-0.08390.0096
40328_atTWIST1 twist homolog 1 (acrocephalosyndactyly 3; Saethre-Chotzen syndrome) (Drosophila)-0.08360.0096
39943_atORC2L origin recognition complex, subunit 2-like (yeast)0.0778-0.0089
32443_atZNF157 zinc finger protein 157 (HZF22)0.0705-0.0081
40944_atTIEG2 TGFB inducible early growth response 2-0.06210.0071
31822_atCUTL1 cut-like 1, CCAAT displacement protein (Drosophila)-0.05790.0066
1219_atIRF2 interferon regulatory factor 2-0.05010.0058
1322_atE2F1 E2F transcription factor 10.0469-0.0054
978_atBCL6 B-cell CLL/lymphoma 6 (zinc finger protein 51)0.0446-0.0051
38603_atZNF136 zinc finger protein 136 (clone pHZ-20)0.0383-0.0044
34551_atPOU4F2 POU domain, class 4, transcription factor 20.0307-0.0035
1571_f_atRB1 retinoblastoma 1 (including osteosarcoma)0.0283-0.0032
1220_g_atIRF2 interferon regulatory factor 2-0.01590.0018
1672_f_atRB1 retinoblastoma 1 (including osteosarcoma)-0.00970.0011
32267_atZNF345 zinc finger protein 3450.0067-8e-04

Performance on training data

 SensitivitySpecificity
CARCINOID11
other11

Performance on test data

 SensitivitySpecificity
CARCINOID10.98361
other0.983611

Predictions

 ClassCARCINOIDotherPredictionn
CL2001031606AA (testset)other01 other
CL2001031607AAother01 other
CL2001031608AAother1e-050.99999 other
CL2001031609AACARCINOID10 CARCINOID
CL2001031611AAother01 other
CL2001031612AA (testset)other1e-050.99999 other
CL2001031613AAother01 other
CL2001031615AAother1e-050.99999 other
CL2001031616AAother01 other
CL2001031618AAother6e-040.9994 other
CL2001031620AA (testset)other01 other
CL2001031621AAother01 other
CL2001031622AA (testset)other01 other
CL2001031625AAother01 other
CL2001031627AAother01 other
CL2001031628AAother01 other
CL2001031629AAother01 other
CL2001031630AAother2e-050.99998 other
CL2001031631AAother01 other
CL2001031632AAother01 other
CL2001031634AAother01 other
CL2001031635AA (testset)other01 other
CL2001031636AA (testset)other01 other
CL2001032002AA (testset)other0.00360.9964 other
CL2001032005AA (testset)other01 other
CL2001032008AAother01 other
CL2001032009AA (testset)other01 other
CL2001032010AAother01 other
CL2001032011AAother01 other
CL2001032012AA (testset)other01 other
CL2001032013AA (testset)other4e-050.99996 other
CL2001032015AAother01 other
CL2001032016AAother01 other
CL2001032019AAother01 other
CL2001032020AA (testset)other01 other
CL2001032025AAother2e-050.99998 other
CL2001032026AAother01 other
CL2001032027AA (testset)other01 other
CL2001032030AAother1e-050.99999 other
CL2001032031AAother1e-050.99999 other
CL2001032032AA (testset)other5e-050.99995 other
CL2001032034AAother0.000150.99985 other
CL2001032036AAother0.15540.8446 other
CL2001032041AAother1e-050.99999 other
CL2001032043AAother0.000970.99903 other
CL2001032044AA (testset)CARCINOID0.999991e-05 CARCINOID
CL2001032045AAother0.000550.99945 other
CL2001032046AAother0.000120.99988 other
CL2001032101AACARCINOID0.999260.00074 CARCINOID
CL2001032102AAother1e-050.99999 other
CL2001032103AAother1e-050.99999 other
CL2001032104AAother01 other
CL2001032105AA (testset)other1e-050.99999 other
CL2001032107AAother01 other
CL2001032108AAother01 other
CL2001032109AA (testset)other0.008540.99146 other
CL2001032110AA (testset)other01 other
CL2001032111AAother01 other
CL2001032113AAother0.001840.99816 other
CL2001032114AAother01 other
CL2001032115AAother0.017990.98201 other
CL2001032116AAother0.000160.99984 other
CL2001032117AA (testset)other01 other
CL2001032121AA (testset)other0.705020.29498 CARCINOID
CL2001032122AAother01 other
CL2001032124AACARCINOID0.999730.00027 CARCINOID
CL2001032125AAother01 other
CL2001032127AA (testset)CARCINOID10 CARCINOID
CL2001032128AAother2e-050.99998 other
CL2001032129AAother01 other
CL2001032130AA (testset)other01 other
CL2001032132AA (testset)other6e-050.99994 other
CL2001032134AAother01 other
CL2001032135AAother01 other
CL2001032136AAother01 other
CL2001032138AAother01 other
CL2001032141AAother1e-050.99999 other
CL2001032142AA (testset)other01 other
CL2001032144AAother01 other
CL2001032145AA (testset)CARCINOID0.999870.00013 CARCINOID
CL2001032147AAother01 other
CL2001032149AAother01 other
CL2001032151AACARCINOID10 CARCINOID
CL2001032152AA (testset)CARCINOID10 CARCINOID
CL2001032153AAother2e-050.99998 other
CL2001032155AA (testset)other01 other
CL2001032156AAother1e-050.99999 other
CL2001032202AA (testset)other4e-050.99996 other
CL2001032206AAother01 other
CL2001032207AA (testset)other01 other
CL2001032209AA (testset)other01 other
CL2001032210AACARCINOID10 CARCINOID
CL2001032211AAother01 other
CL2001032212AA (testset)other0.000550.99945 other
CL2001032213AA (testset)other4e-050.99996 other
CL2001032214AAother01 other
CL2001032217AA (testset)other0.062330.93767 other
CL2001032218AA (testset)other01 other
CL2001032219AA (testset)CARCINOID0.956560.04344 CARCINOID
CL2001032220AAother7e-050.99993 other
CL2001032222AA (testset)other01 other
CL2001032229AA (testset)other5e-050.99995 other
CL2001032231AAother01 other
CL2001032232AAother1e-050.99999 other
CL2001032233AAother01 other
CL2001032238AACARCINOID0.999770.00023 CARCINOID
CL2001032239AAother01 other
CL2001032240AAother01 other
CL2001032241AA (testset)other01 other
CL2001032242AAother01 other
CL2001032243AA (testset)other01 other
CL2001032248AAother01 other
CL2001032249AAother01 other
CL2001032252AAother01 other
CL2001032254AA (testset)other01 other
CL2001032255AAother01 other
CL2001032256AA (testset)other01 other
CL2001032259AAother01 other
CL2001032260AAother0.011710.98829 other
CL2001032301AAother01 other
CL2001032304AA (testset)other01 other
CL2001032305AA (testset)other01 other
CL2001032306AAother1e-050.99999 other
CL2001032307AAother01 other
CL2001032308AAother2e-050.99998 other
CL2001032309AAother01 other
CL2001032310AAother0.009840.99016 other
CL2001032311AAother01 other
CL2001032312AAother01 other
CL2001032313AAother2e-050.99998 other
CL2001032314AAother8e-050.99992 other
CL2001032316AA (testset)other01 other
CL2001032601AAother01 other
CL2001032602AAother8e-050.99992 other
CL2001032604AAother01 other
CL2001032607AACARCINOID10 CARCINOID
CL2001032608AAother01 other
CL2001032610AA (testset)other01 other
CL2001032612AAother01 other
CL2001032613AA (testset)other01 other
CL2001032614AA (testset)other1e-050.99999 other
CL2001032616AAother0.000960.99904 other
CL2001032617AA (testset)other1e-050.99999 other
CL2001032620AA (testset)other01 other
CL2001032625AAother0.00210.9979 other
CL2001032627AA (testset)other01 other
CL2001032628AAother01 other
CL2001032629AACARCINOID0.999991e-05 CARCINOID
CL2001032630AACARCINOID0.997750.00225 CARCINOID
CL2001032632AAother0.017670.98233 other
CL2001032638AA (testset)other1e-050.99999 other
CL2001032640AAother1e-050.99999 other
CL2001032643AAother01 other
CL2001032644AA (testset)other01 other
CL2001032647AAother01 other
CL2001032701AAother01 other
CL2001032702AA (testset)other01 other
CL2001032703AAother01 other
CL2001032704AA (testset)other01 other
CL2001032706AAother01 other
CL2001032709AAother01 other
CL2001032716AAother01 other
CL2001032717AA (testset)other0.000150.99985 other
CL2001032718AAother0.000410.99959 other
CL2001032719AA (testset)other01 other
CL2001032720AAother0.153570.84643 other
CL2001032722AACARCINOID10 CARCINOID
CL2001032724AAother0.000260.99974 other
CL2001032725AA (testset)other0.014830.98517 other
CL2001032727AAother3e-050.99997 other
CL2001032729AA (testset)other01 other
CL2001032730AAother01 other
CL2001032732AA (testset)other2e-050.99998 other
CL2001032733AAother01 other
CL2001032738AAother01 other
CL2001032742AAother01 other
CL2001032746AAother01 other
CL2001032747AAother1e-050.99999 other
CL2001032833AAother9e-050.99991 other
CL2001032836AAother01 other
CL2001032838AAother01 other
CL2001032839AAother01 other
CL2001032841AAother01 other
CL2001032842AA (testset)other0.000170.99983 other
CL2001032843AA (testset)other1e-050.99999 other
CL2001032845AA (testset)other0.001110.99889 other
CL2001032846AAother01 other
CL2001032847AACARCINOID0.998920.00108 CARCINOID
CL2001032848AA (testset)other01 other
CL2001032850AACARCINOID0.999991e-05 CARCINOID
CL2001032853AA (testset)other01 other
CL2001032854AACARCINOID0.999991e-05 CARCINOID
CL2001032856AAother01 other
CL2001032857AA (testset)other2e-050.99998 other
CL2001032860AACARCINOID0.999973e-05 CARCINOID
CL2001040305AAother6e-050.99994 other
CL2001040306AAother8e-050.99992 other
CL2001041708AAother01 other
CL2001041711AA (testset)other2e-050.99998 other
CL2001041716AAother01 other
CL2001042501AA (testset)CARCINOID10 CARCINOID
CL2001042505AAother0.005850.99415 other
CL2001042506AAother01 other

 


Generated by StAM on Tue Sep 7 17:20:47 2004