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| Total number of samples: | 156 |
|---|---|
| Training samples: | 156 ( 139 from ADENO, 17 from NORMAL ) |
| Test samples: | 156 ( 139 from ADENO, 17 from NORMAL ) |
| Focus on class: | ADENO |
| Data frm chip: | hgu95av2 |
| Start node: | GO:0008150 ( biological_process ) |
| Chip annotations for: | hgu95av2 |
|---|---|
| Chip data package: | data package version 1.5.1 Mon May 10 11:12:58 2004 |
| GO data package: | GO package version 1.5.1 Mon May 10 11:46:39 2004 |
| Root node chosen: | GO:0008150 ( biological_process ) |
| Number of probesets on the chip: | 12625 |
| Probesets annotated below GO:0008150 : | 8679 |
| Number of nodes with direct annotations: | 1359 |
| Total number of nodes: | 2204 |
| Number of samples: | 156 |
|---|---|
| Number of classes: | 2 |
| Class weights: | 'ADENO': 0.1 'NORMAL': 0.9 |
| Class prior: | 'ADENO':0.891 'NORMAL':0.109 |
| Shrinkage candidates: | 0, 0.135, 0.271, 0.406, 0.541, 0.677, 0.812, 0.947, 1.083, 1.218, 1.353, 1.489, 1.624, 1.759, 1.895, 2.03, 2.165, 2.301, 2.436, 2.571, 2.707, 2.842, 2.977, 3.113, 3.248, 3.384, 3.519, 3.654, 3.79, 3.925 |
| Root.error.rate | Root.performance | Mean.redundancy | Nodes | Genes | |
|---|---|---|---|---|---|
| 0 | 0.01282 | 0.95761 | 2.4472 | 664 | 8142 |
| 0.135 | 0.01282 | 0.95005 | 2.44909 | 664 | 8142 |
| 0.271 | 0.01282 | 0.94165 | 2.45132 | 664 | 8142 |
| 0.406 | 0.01282 | 0.93224 | 2.45396 | 664 | 8142 |
| 0.541 | 0.01282 | 0.92161 | 2.4573 | 664 | 8142 |
| 0.677 | 0.01282 | 0.90958 | 2.46577 | 661 | 8142 |
| 0.812 | 0.01282 | 0.89628 | 2.47786 | 656 | 8136 |
| 0.947 | 0.01282 | 0.88126 | 2.48869 | 651 | 8128 |
| 1.083 | 0.01282 | 0.86463 | 2.50067 | 646 | 8123 |
| 1.218 | 0.01282 | 0.84663 | 2.53605 | 625 | 8118 |
| 1.353 | 0.01282 | 0.82698 | 2.562 | 607 | 8081 |
| 1.489 | 0.01282 | 0.8045 | 2.59757 | 581 | 8074 |
| 1.624 | 0.01282 | 0.77838 | 2.61641 | 564 | 8066 |
| 1.759 | 0.01282 | 0.75212 | 2.63782 | 532 | 8040 |
| 1.895 | 0.01282 | 0.7226 | 2.71213 | 493 | 8015 |
| 2.03 | 0.01282 | 0.69176 | 2.75641 | 464 | 7997 |
| 2.165 | 0.01282 | 0.66395 | 2.79672 | 437 | 7971 |
| 2.301 | 0.01282 | 0.62959 | 2.83229 | 418 | 7897 |
| 2.436 | 0.01282 | 0.59096 | 2.93371 | 379 | 7771 |
| 2.571 | 0.01282 | 0.5475 | 3.00782 | 350 | 7666 |
| 2.707 | 0.01282 | 0.49865 | 3.02177 | 333 | 7486 |
| 2.842 | 0.01282 | 0.45402 | 3.12835 | 292 | 7347 |
| 2.977 | 0.01923 | 0.40869 | 3.16753 | 261 | 7180 |
| 3.113 | 0.01923 | 0.34338 | 3.2279 | 223 | 6995 |
| 3.248 | 0.01923 | 0.28765 | 3.315 | 202 | 6725 |
| 3.384 | 0.01923 | 0.23231 | 3.70353 | 142 | 4919 |
| 3.519 | 0.01282 | 0.19329 | 4.23073 | 105 | 3195 |
| 3.654 | 0.01282 | 0.164 | 4.31064 | 81 | 2865 |
| 3.79 | 0.01282 | 0.16357 | 5.06415 | 46 | 1856 |
| Best Delta | Root Error Rate | Performance | Redundancy | #Nodes | #Genes | |
|---|---|---|---|---|---|---|
| 0 | 0 | 0.0128 | 0.9576 | 2.4472 | 664 | 8142 |
| 0.1 | 0.5414 | 0.0128 | 0.9216 | 2.4573 | 664 | 8142 |
| 0.2 | 1.0827 | 0.0128 | 0.8646 | 2.5007 | 646 | 8123 |
| 0.3 | 1.7594 | 0.0128 | 0.7521 | 2.6378 | 532 | 8040 |
| 0.4 | 3.2482 | 0.0192 | 0.2877 | 3.315 | 202 | 6725 |
| 0.5 | 3.2482 | 0.0192 | 0.2877 | 3.315 | 202 | 6725 |
| 0.6 | 3.2482 | 0.0192 | 0.2877 | 3.315 | 202 | 6725 |
| 0.7 | 3.3835 | 0.0192 | 0.2323 | 3.7035 | 142 | 4919 |
| 0.8 | 3.6542 | 0.0128 | 0.164 | 4.3106 | 81 | 2865 |
| 0.9 | 3.6542 | 0.0128 | 0.164 | 4.3106 | 81 | 2865 |
| 1 | 3.7895 | 0.0128 | 0.1636 | 5.0642 | 46 | 1856 |
| Number of classes: | 2 |
|---|---|
| Class weights: | 'ADENO': 0.1 'NORMAL': 0.9 |
| Class prior: | 'ADENO':0.891 'NORMAL':0.109 |
| Chosen shrinkage level: | 3.654 (by accepting the system default (after consulting weighting alternatives) ) |
| Number of nodes left | 81 |
| Number of accessible genes | 2865 |
Hover over a node to see its description, click on it to view its detailed results.
| Number of samples: | 156 (139 from ADENO, 17 from NORMAL) |
|---|---|
| Classes: | ADENO, NORMAL |
Hover over a node description to see its ID, click on it to see detailed results.
GO:0008150 | biological_process | Biological Process |
| GO:0003673 | Gene_Ontology (not in fit) |
|---|
| ID | Term | Weight |
|---|---|---|
| GO:0007610 | behavior | 0.00000 |
| GO:0000004 | biological_process unknown | 0.00000 |
| GO:0009987 | cellular process | 0.24599 |
| GO:0007275 | development | 0.17928 |
| GO:0008371 | obsolete biological process | 0.00000 |
| GO:0007582 | physiological process | 0.29079 |
| GO:0050789 | regulation of biological process | 0.28394 |
| GO:0016032 | viral life cycle | 0.00000 |
| Sensitivity | Specificity | |
|---|---|---|
| ADENO | 0.98561 | 1 |
| NORMAL | 1 | 0.98561 |
| Sensitivity | Specificity | |
|---|---|---|
| ADENO | 0.98561 | 1 |
| NORMAL | 1 | 0.98561 |
| Class | ADENO | NORMAL | Predictionn | |
|---|---|---|---|---|
| CL2001031608AA (testset) | ADENO | 0.93899 | 0.06101 | ADENO |
| CL2001031611AA (testset) | ADENO | 0.99434 | 0.00566 | ADENO |
| CL2001031612AA (testset) | ADENO | 0.83812 | 0.16188 | ADENO |
| CL2001031613AA (testset) | ADENO | 0.75374 | 0.24626 | ADENO |
| CL2001031615AA (testset) | ADENO | 0.99825 | 0.00175 | ADENO |
| CL2001031616AA (testset) | ADENO | 0.99338 | 0.00662 | ADENO |
| CL2001031618AA (testset) | ADENO | 0.98876 | 0.01124 | ADENO |
| CL2001031622AA (testset) | ADENO | 0.99723 | 0.00277 | ADENO |
| CL2001031625AA (testset) | ADENO | 0.99347 | 0.00653 | ADENO |
| CL2001031627AA (testset) | ADENO | 0.98816 | 0.01184 | ADENO |
| CL2001031628AA (testset) | ADENO | 0.975 | 0.025 | ADENO |
| CL2001031629AA (testset) | ADENO | 0.9981 | 0.0019 | ADENO |
| CL2001031630AA (testset) | ADENO | 0.99789 | 0.00211 | ADENO |
| CL2001031631AA (testset) | ADENO | 0.99886 | 0.00114 | ADENO |
| CL2001031632AA (testset) | ADENO | 0.99463 | 0.00537 | ADENO |
| CL2001031634AA (testset) | ADENO | 0.96843 | 0.03157 | ADENO |
| CL2001031635AA (testset) | ADENO | 0.97695 | 0.02305 | ADENO |
| CL2001031636AA (testset) | ADENO | 0.98929 | 0.01071 | ADENO |
| CL2001032002AA (testset) | ADENO | 0.99564 | 0.00436 | ADENO |
| CL2001032005AA (testset) | ADENO | 0.99866 | 0.00134 | ADENO |
| CL2001032008AA (testset) | ADENO | 0.99833 | 0.00167 | ADENO |
| CL2001032009AA (testset) | ADENO | 0.99717 | 0.00283 | ADENO |
| CL2001032011AA (testset) | ADENO | 0.91168 | 0.08832 | ADENO |
| CL2001032012AA (testset) | ADENO | 0.87839 | 0.12161 | ADENO |
| CL2001032013AA (testset) | ADENO | 0.96909 | 0.03091 | ADENO |
| CL2001032015AA (testset) | ADENO | 0.76806 | 0.23194 | ADENO |
| CL2001032016AA (testset) | ADENO | 0.99068 | 0.00932 | ADENO |
| CL2001032019AA (testset) | ADENO | 0.98375 | 0.01625 | ADENO |
| CL2001032020AA (testset) | ADENO | 0.98844 | 0.01156 | ADENO |
| CL2001032025AA (testset) | ADENO | 0.99457 | 0.00543 | ADENO |
| CL2001032026AA (testset) | ADENO | 0.99588 | 0.00412 | ADENO |
| CL2001032027AA (testset) | ADENO | 0.9497 | 0.0503 | ADENO |
| CL2001032030AA (testset) | ADENO | 0.99673 | 0.00327 | ADENO |
| CL2001032031AA (testset) | ADENO | 0.98139 | 0.01861 | ADENO |
| CL2001032032AA (testset) | ADENO | 0.95784 | 0.04216 | ADENO |
| CL2001032034AA (testset) | ADENO | 0.54013 | 0.45987 | ADENO |
| CL2001032036AA (testset) | ADENO | 0.93495 | 0.06505 | ADENO |
| CL2001032103AA (testset) | ADENO | 0.98747 | 0.01253 | ADENO |
| CL2001032104AA (testset) | ADENO | 0.97908 | 0.02092 | ADENO |
| CL2001032105AA (testset) | ADENO | 0.99799 | 0.00201 | ADENO |
| CL2001032107AA (testset) | ADENO | 0.99719 | 0.00281 | ADENO |
| CL2001032108AA (testset) | ADENO | 0.98528 | 0.01472 | ADENO |
| CL2001032109AA (testset) | ADENO | 0.95592 | 0.04408 | ADENO |
| CL2001032110AA (testset) | ADENO | 0.95649 | 0.04351 | ADENO |
| CL2001032111AA (testset) | ADENO | 0.95236 | 0.04764 | ADENO |
| CL2001032113AA (testset) | ADENO | 0.99903 | 0.00097 | ADENO |
| CL2001032114AA (testset) | ADENO | 0.98914 | 0.01086 | ADENO |
| CL2001032115AA (testset) | ADENO | 0.99496 | 0.00504 | ADENO |
| CL2001032116AA (testset) | ADENO | 0.9965 | 0.0035 | ADENO |
| CL2001032117AA (testset) | ADENO | 0.98358 | 0.01642 | ADENO |
| CL2001032125AA (testset) | ADENO | 0.98968 | 0.01032 | ADENO |
| CL2001032130AA (testset) | ADENO | 0.98109 | 0.01891 | ADENO |
| CL2001032132AA (testset) | ADENO | 0.9603 | 0.0397 | ADENO |
| CL2001032134AA (testset) | ADENO | 0.89293 | 0.10707 | ADENO |
| CL2001032135AA (testset) | ADENO | 0.9431 | 0.0569 | ADENO |
| CL2001032136AA (testset) | ADENO | 0.97621 | 0.02379 | ADENO |
| CL2001032138AA (testset) | ADENO | 0.95936 | 0.04064 | ADENO |
| CL2001032141AA (testset) | ADENO | 0.99413 | 0.00587 | ADENO |
| CL2001032142AA (testset) | ADENO | 0.96921 | 0.03079 | ADENO |
| CL2001032149AA (testset) | ADENO | 0.94962 | 0.05038 | ADENO |
| CL2001032155AA (testset) | ADENO | 0.18964 | 0.81036 | NORMAL |
| CL2001032156AA (testset) | ADENO | 0.9388 | 0.0612 | ADENO |
| CL2001032211AA (testset) | ADENO | 0.99802 | 0.00198 | ADENO |
| CL2001032212AA (testset) | ADENO | 0.9984 | 0.0016 | ADENO |
| CL2001032213AA (testset) | ADENO | 0.94991 | 0.05009 | ADENO |
| CL2001032214AA (testset) | ADENO | 0.78651 | 0.21349 | ADENO |
| CL2001032229AA (testset) | ADENO | 0.99541 | 0.00459 | ADENO |
| CL2001032232AA (testset) | ADENO | 0.97187 | 0.02813 | ADENO |
| CL2001032233AA (testset) | ADENO | 0.99608 | 0.00392 | ADENO |
| CL2001032241AA (testset) | ADENO | 0.96454 | 0.03546 | ADENO |
| CL2001032242AA (testset) | ADENO | 0.99246 | 0.00754 | ADENO |
| CL2001032243AA (testset) | ADENO | 0.96464 | 0.03536 | ADENO |
| CL2001032248AA (testset) | ADENO | 0.99877 | 0.00123 | ADENO |
| CL2001032249AA (testset) | ADENO | 0.98028 | 0.01972 | ADENO |
| CL2001032252AA (testset) | ADENO | 0.97883 | 0.02117 | ADENO |
| CL2001032254AA (testset) | ADENO | 0.98818 | 0.01182 | ADENO |
| CL2001032255AA (testset) | ADENO | 0.9973 | 0.0027 | ADENO |
| CL2001032259AA (testset) | ADENO | 0.98548 | 0.01452 | ADENO |
| CL2001032301AA (testset) | ADENO | 0.9898 | 0.0102 | ADENO |
| CL2001032306AA (testset) | ADENO | 0.98867 | 0.01133 | ADENO |
| CL2001032307AA (testset) | ADENO | 0.66446 | 0.33554 | ADENO |
| CL2001032308AA (testset) | ADENO | 0.99337 | 0.00663 | ADENO |
| CL2001032309AA (testset) | ADENO | 0.99719 | 0.00281 | ADENO |
| CL2001032310AA (testset) | ADENO | 0.99796 | 0.00204 | ADENO |
| CL2001032311AA (testset) | ADENO | 0.99771 | 0.00229 | ADENO |
| CL2001032312AA (testset) | ADENO | 0.99136 | 0.00864 | ADENO |
| CL2001032313AA (testset) | ADENO | 0.99714 | 0.00286 | ADENO |
| CL2001032314AA (testset) | ADENO | 0.98794 | 0.01206 | ADENO |
| CL2001032316AA (testset) | ADENO | 0.99064 | 0.00936 | ADENO |
| CL2001032601AA (testset) | ADENO | 0.99821 | 0.00179 | ADENO |
| CL2001032602AA (testset) | ADENO | 0.99675 | 0.00325 | ADENO |
| CL2001032604AA (testset) | ADENO | 0.99647 | 0.00353 | ADENO |
| CL2001032610AA (testset) | ADENO | 0.99688 | 0.00312 | ADENO |
| CL2001032612AA (testset) | ADENO | 0.98961 | 0.01039 | ADENO |
| CL2001032613AA (testset) | ADENO | 0.99572 | 0.00428 | ADENO |
| CL2001032614AA (testset) | ADENO | 0.99902 | 0.00098 | ADENO |
| CL2001032616AA (testset) | ADENO | 0.99538 | 0.00462 | ADENO |
| CL2001032617AA (testset) | ADENO | 0.998 | 0.002 | ADENO |
| CL2001032620AA (testset) | ADENO | 0.99578 | 0.00422 | ADENO |
| CL2001032625AA (testset) | ADENO | 0.99892 | 0.00108 | ADENO |
| CL2001032628AA (testset) | ADENO | 0.99718 | 0.00282 | ADENO |
| CL2001032638AA (testset) | ADENO | 0.98015 | 0.01985 | ADENO |
| CL2001032640AA (testset) | ADENO | 0.99637 | 0.00363 | ADENO |
| CL2001032643AA (testset) | ADENO | 0.99354 | 0.00646 | ADENO |
| CL2001032647AA (testset) | ADENO | 0.92455 | 0.07545 | ADENO |
| CL2001032701AA (testset) | ADENO | 0.98929 | 0.01071 | ADENO |
| CL2001032702AA (testset) | ADENO | 0.97873 | 0.02127 | ADENO |
| CL2001032703AA (testset) | ADENO | 0.97592 | 0.02408 | ADENO |
| CL2001032704AA (testset) | ADENO | 0.96922 | 0.03078 | ADENO |
| CL2001032706AA (testset) | ADENO | 0.98186 | 0.01814 | ADENO |
| CL2001032709AA (testset) | ADENO | 0.99581 | 0.00419 | ADENO |
| CL2001032716AA (testset) | ADENO | 0.98032 | 0.01968 | ADENO |
| CL2001032717AA (testset) | ADENO | 0.99505 | 0.00495 | ADENO |
| CL2001032729AA (testset) | ADENO | 0.99262 | 0.00738 | ADENO |
| CL2001032730AA (testset) | ADENO | 0.99816 | 0.00184 | ADENO |
| CL2001032733AA (testset) | ADENO | 0.98969 | 0.01031 | ADENO |
| CL2001032738AA (testset) | ADENO | 0.99553 | 0.00447 | ADENO |
| CL2001032742AA (testset) | ADENO | 0.99119 | 0.00881 | ADENO |
| CL2001032746AA (testset) | ADENO | 0.99618 | 0.00382 | ADENO |
| CL2001032747AA (testset) | ADENO | 0.99244 | 0.00756 | ADENO |
| CL2001032833AA (testset) | ADENO | 0.99514 | 0.00486 | ADENO |
| CL2001032836AA (testset) | ADENO | 0.99821 | 0.00179 | ADENO |
| CL2001032838AA (testset) | ADENO | 0.99226 | 0.00774 | ADENO |
| CL2001032839AA (testset) | ADENO | 0.9872 | 0.0128 | ADENO |
| CL2001032841AA (testset) | ADENO | 0.99615 | 0.00385 | ADENO |
| CL2001032842AA (testset) | ADENO | 0.99874 | 0.00126 | ADENO |
| CL2001032843AA (testset) | ADENO | 0.9972 | 0.0028 | ADENO |
| CL2001032845AA (testset) | ADENO | 0.98696 | 0.01304 | ADENO |
| CL2001032846AA (testset) | ADENO | 0.9908 | 0.0092 | ADENO |
| CL2001032848AA (testset) | ADENO | 0.00922 | 0.99078 | NORMAL |
| CL2001032856AA (testset) | ADENO | 0.99275 | 0.00725 | ADENO |
| CL2001032857AA (testset) | ADENO | 0.9887 | 0.0113 | ADENO |
| CL2001040305AA (testset) | ADENO | 0.99908 | 0.00092 | ADENO |
| CL2001040306AA (testset) | ADENO | 0.9931 | 0.0069 | ADENO |
| CL2001041708AA (testset) | ADENO | 0.99608 | 0.00392 | ADENO |
| CL2001041711AA (testset) | ADENO | 0.99096 | 0.00904 | ADENO |
| CL2001041716AA (testset) | ADENO | 0.87337 | 0.12663 | ADENO |
| CL2001042505AA (testset) | ADENO | 0.99625 | 0.00375 | ADENO |
| CL2001042506AA (testset) | ADENO | 0.81465 | 0.18535 | ADENO |
| CL2001032010AA (testset) | NORMAL | 0.06289 | 0.93711 | NORMAL |
| CL2001032041AA (testset) | NORMAL | 0.06399 | 0.93601 | NORMAL |
| CL2001032043AA (testset) | NORMAL | 0.00498 | 0.99502 | NORMAL |
| CL2001032045AA (testset) | NORMAL | 0.03415 | 0.96585 | NORMAL |
| CL2001032046AA (testset) | NORMAL | 0.03812 | 0.96188 | NORMAL |
| CL2001032102AA (testset) | NORMAL | 0.00663 | 0.99337 | NORMAL |
| CL2001032128AA (testset) | NORMAL | 0.03092 | 0.96908 | NORMAL |
| CL2001032147AA (testset) | NORMAL | 0.00729 | 0.99271 | NORMAL |
| CL2001032202AA (testset) | NORMAL | 0.00275 | 0.99725 | NORMAL |
| CL2001032206AA (testset) | NORMAL | 0.06485 | 0.93515 | NORMAL |
| CL2001032220AA (testset) | NORMAL | 0.01116 | 0.98884 | NORMAL |
| CL2001032256AA (testset) | NORMAL | 0.28096 | 0.71904 | NORMAL |
| CL2001032304AA (testset) | NORMAL | 0.11018 | 0.88982 | NORMAL |
| CL2001032718AA (testset) | NORMAL | 0.00627 | 0.99373 | NORMAL |
| CL2001032724AA (testset) | NORMAL | 0.243 | 0.757 | NORMAL |
| CL2001032725AA (testset) | NORMAL | 0.01294 | 0.98706 | NORMAL |
| CL2001032727AA (testset) | NORMAL | 0.01482 | 0.98518 | NORMAL |
