GO:0007601


GO:0007601

vision
(annotated genes)

Biological
Process

Parent node

This leaf node contains 124 genes

The following 124 of these are used in classification:

 SymbolGenenameADENO scoreNORMAL score
35164_atWFS1 Wolfram syndrome 1 (wolframin)-0.19111.4808
1035_g_atTIMP3 tissue inhibitor of metalloproteinase 3 (Sorsby fundus dystrophy, pseudoinflammatory)-0.16331.266
32551_atEFEMP1 EGF-containing fibulin-like extracellular matrix protein 1-0.1571.2169
32243_g_atCRYAB crystallin, alpha B-0.15291.1853
1034_atTIMP3 tissue inhibitor of metalloproteinase 3 (Sorsby fundus dystrophy, pseudoinflammatory)-0.15241.1808
38164_atRPGR retinitis pigmentosa GTPase regulator-0.14511.1244
32242_atCRYAB crystallin, alpha B-0.1270.9845
37892_atCOL11A1 collagen, type XI, alpha 10.1177-0.9119
36636_atOAT ornithine aminotransferase (gyrate atrophy)0.0806-0.6248
34774_atPPT1 palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile)-0.06970.54
38107_atUNC119 unc-119 homolog (C. elegans)0.0679-0.5265
38148_atCRY1 cryptochrome 1 (photolyase-like)-0.05680.44
40403_atMYOC myocilin, trabecular meshwork inducible glucocorticoid response-0.0560.4338
40782_atDHRS3 dehydrogenase/reductase (SDR family) member 3-0.05560.431
34488_i_atFSCN2 fascin homolog 2, actin-bundling protein, retinal (Strongylocentrotus purpuratus)0.055-0.4266
39964_atRP2 retinitis pigmentosa 2 (X-linked recessive)-0.05480.425
35584_s_atCACNA1F calcium channel, voltage-dependent, alpha 1F subunit0.0534-0.4135
36774_f_atPRB1 proline-rich protein BstNI subfamily 10.0521-0.4041
34571_atGNAT2 guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2-0.05130.3973
41671_atEML1 echinoderm microtubule associated protein like 1-0.05030.3899
38732_atCLNS1A chloride channel, nucleotide-sensitive, 1A0.049-0.3796
35593_atAOC2 amine oxidase, copper containing 2 (retina-specific)-0.04840.3754
38038_atLUM lumican-0.04730.3669
36024_atPROL4 proline rich 4 (lacrimal)0.0447-0.3461
36775_f_atPRB2 proline-rich protein BstNI subfamily 20.0446-0.3459
32458_f_atPRB4 proline-rich protein BstNI subfamily 40.0434-0.3363
32457_f_atPRB4 proline-rich protein BstNI subfamily 40.0429-0.3328
41470_atPROM1 prominin 10.0401-0.3111
32204_atPDE6G phosphodiesterase 6G, cGMP-specific, rod, gamma0.0395-0.3062
41027_atFOXC1 forkhead box C10.0385-0.2985
37653_atCOL18A1 collagen, type XVIII, alpha 10.0383-0.2969
32404_atCNGA3 cyclic nucleotide gated channel alpha 30.038-0.2946
111_atRABGGTA Rab geranylgeranyltransferase, alpha subunit-0.03580.2776
32951_g_atPOU6F2 POU domain, class 6, transcription factor 20.0354-0.2742
38539_atSLC24A1 solute carrier family 24 (sodium/potassium/calcium exchanger), member 1-0.03480.2695
36023_atPROL4 proline rich 4 (lacrimal)0.0346-0.2683
34069_s_atSSX2 synovial sarcoma, X breakpoint 20.0345-0.2677
34113_atRPE65 retinal pigment epithelium-specific protein 65kDa0.0305-0.2361
33313_g_atCRYAA crystallin, alpha A0.03-0.2328
38874_s_atRDS retinal degeneration, slow-0.02980.2311
33159_atNRL neural retina leucine zipper-0.02890.2243
32885_f_atPRB2 proline-rich protein BstNI subfamily 20.0288-0.2233
32535_atFBN1 fibrillin 1 (Marfan syndrome)0.0285-0.2205
31970_r_atPPEF2 protein phosphatase, EF hand calcium-binding domain 2-0.02740.2124
39247_atABCC6 ATP-binding cassette, sub-family C (CFTR/MRP), member 60.0266-0.2065
39524_atRHO rhodopsin (opsin 2, rod pigment) (retinitis pigmentosa 4, autosomal dominant)-0.02650.2054
33175_atBBS4 Bardet-Biedl syndrome 4-0.02590.2006
41327_atEML2 echinoderm microtubule associated protein like 20.0255-0.1978
34489_f_atFSCN2 fascin homolog 2, actin-bundling protein, retinal (Strongylocentrotus purpuratus)-0.02440.189
34030_atTULP1 tubby like protein 10.0236-0.1831
40948_atROM1 retinal outer segment membrane protein 1-0.02360.1827
31981_atCRYBB3 crystallin, beta B30.0234-0.1817
32876_s_atRHO rhodopsin (opsin 2, rod pigment) (retinitis pigmentosa 4, autosomal dominant)0.0232-0.1798
33197_atMYO7A myosin VIIA (Usher syndrome 1B (autosomal recessive, severe))0.0229-0.1774
33312_atCRYAA crystallin, alpha A0.0227-0.1761
36693_atEYA3 eyes absent homolog 3 (Drosophila)-0.02110.1637
100_g_atRABGGTA Rab geranylgeranyltransferase, alpha subunit-0.02080.161
32950_atPOU6F2 POU domain, class 6, transcription factor 20.0206-0.1593
291_s_atTACSTD2 tumor-associated calcium signal transducer 20.02-0.1547
39053_atPRPF3 PRP3 pre-mRNA processing factor 3 homolog (yeast)0.0192-0.1491
40557_atGUCA1B guanylate cyclase activator 1B (retina)0.0192-0.1488
37703_atRABGGTB Rab geranylgeranyltransferase, beta subunit0.0186-0.1439
36325_atCRYBA1 crystallin, beta A1-0.01850.1438
41779_atRGS16 regulator of G-protein signalling 16-0.0180.1394
40648_atMERTK c-mer proto-oncogene tyrosine kinase-0.01770.1369
34465_atRS1 retinoschisis (X-linked, juvenile) 1-0.01680.1303
31977_atGUCY2D guanylate cyclase 2D, membrane (retina-specific)0.0168-0.1299
33311_atCRYAA crystallin, alpha A0.0165-0.1277
41041_s_atMYO7A myosin VIIA (Usher syndrome 1B (autosomal recessive, severe))0.0158-0.1225
41328_s_atEML2 echinoderm microtubule associated protein like 2-0.01540.1192
1385_atTGFBI transforming growth factor, beta-induced, 68kDa0.0146-0.1133
126_s_atSSX2 synovial sarcoma, X breakpoint 20.0146-0.1133
38928_r_atTYR tyrosinase (oculocutaneous albinism IA)-0.01460.1132
40071_atCYP1B1 cytochrome P450, family 1, subfamily B, polypeptide 10.0145-0.1122
40703_atRBP3 retinol binding protein 3, interstitial0.0144-0.1116
32364_atSIX6 sine oculis homeobox homolog 6 (Drosophila)0.0143-0.1106
34437_atTULP2 tubby like protein 20.0139-0.108
41846_atCRX cone-rod homeobox0.0139-0.1079
37847_atUSH1C Usher syndrome 1C (autosomal recessive, severe)0.0133-0.1031
39623_atNDP Norrie disease (pseudoglioma)-0.01320.1022
37902_atCRYZ crystallin, zeta (quinone reductase)0.0128-0.0992
39188_atGUCY2F guanylate cyclase 2F, retinal0.0126-0.0978
38285_atCRYM crystallin, mu0.0124-0.0963
41794_atPDE6H phosphodiesterase 6H, cGMP-specific, cone, gamma-0.01220.0944
964_atABCC6 ATP-binding cassette, sub-family C (CFTR/MRP), member 60.0121-0.0935
38927_i_atTYR tyrosinase (oculocutaneous albinism IA)0.012-0.093
39745_atOPA1 optic atrophy 1 (autosomal dominant)-0.01190.0924
32727_atRDH5 retinol dehydrogenase 5 (11-cis and 9-cis)0.0115-0.0895
40558_atGUCA1B guanylate cyclase activator 1B (retina)-0.01110.086
36346_atRGR retinal G protein coupled receptor0.0103-0.0796
32952_atPOU6F2 POU domain, class 6, transcription factor 2-0.01010.0785
34490_f_atFSCN2 fascin homolog 2, actin-bundling protein, retinal (Strongylocentrotus purpuratus)-0.010.0774
781_atRABGGTB Rab geranylgeranyltransferase, beta subunit0.0097-0.0748
41042_r_atMYO7A myosin VIIA (Usher syndrome 1B (autosomal recessive, severe))0.0092-0.0711
32948_atUSH2A Usher syndrome 2A (autosomal recessive, mild)-0.0090.0701
34631_atEYA4 eyes absent homolog 4 (Drosophila)-0.00880.0683
38538_atSLC24A1 solute carrier family 24 (sodium/potassium/calcium exchanger), member 1-0.00830.0643
41286_atTACSTD2 tumor-associated calcium signal transducer 2-0.0080.0617
36044_atPDE6D phosphodiesterase 6D, cGMP-specific, rod, delta0.0078-0.0601
680_s_atRBP3 retinol binding protein 3, interstitial0.0077-0.0599
32453_atOPN1SW opsin 1 (cone pigments), short-wave-sensitive (color blindness, tritan)0.0075-0.0585
41019_atPDCL phosducin-like-0.00750.0583
1786_atMERTK c-mer proto-oncogene tyrosine kinase-0.00750.0579
31366_atNR2E3 nuclear receptor subfamily 2, group E, member 30.0066-0.0513
38498_atCRYBB3 crystallin, beta B3-0.00540.042
34148_atSIX3 sine oculis homeobox homolog 3 (Drosophila)-0.00530.0415
859_atCYP1B1 cytochrome P450, family 1, subfamily B, polypeptide 10.005-0.0384
38601_atVMD2 vitelliform macular dystrophy (Best disease, bestrophin)0.0044-0.0344
40217_s_atCDS1 CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 10.0041-0.0317
32278_atCHML choroideremia-like (Rab escort protein 2)0.0041-0.0316
40218_atCDS1 CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 1-0.0040.031
32867_atCHM choroideremia (Rab escort protein 1)-0.00360.0282
31606_atRIMS1 regulating synaptic membrane exocytosis 10.0033-0.0257
31969_i_atPPEF2 protein phosphatase, EF hand calcium-binding domain 2-0.00190.015
33160_atNRL neural retina leucine zipper-0.00180.0143
37167_atSCA7 spinocerebellar ataxia 7 (olivopontocerebellar atrophy with retinal degeneration)0.0016-0.0126
31408_atRRH retinal pigment epithelium-derived rhodopsin homolog0.0016-0.0124
36409_f_atSSX2 synovial sarcoma, X breakpoint 2-0.00150.0113
41845_atCRX cone-rod homeobox-0.00140.0111
31667_r_atNR2E3 nuclear receptor subfamily 2, group E, member 3-0.00140.0109
32875_atRHO rhodopsin (opsin 2, rod pigment) (retinitis pigmentosa 4, autosomal dominant)0.0013-0.0104
34615_atKRT12 keratin 12 (Meesmann corneal dystrophy)-0.00120.0089
33174_s_atBBS4 Bardet-Biedl syndrome 4-0.0010.0074
39874_atGUCY2F guanylate cyclase 2F, retinal3e-04-0.0021

Performance on training data

 SensitivitySpecificity
ADENO10.91667
NORMAL0.916671

Performance on test data

 SensitivitySpecificity
ADENO0.956521
NORMAL10.95652

Predictions

 ClassADENONORMALPredictionn
CL2001031608AAADENO0.999170.00083 ADENO
CL2001031611AA (testset)ADENO0.983620.01638 ADENO
CL2001031612AAADENO0.994970.00503 ADENO
CL2001031613AAADENO0.957410.04259 ADENO
CL2001031615AAADENO10 ADENO
CL2001031616AAADENO0.999540.00046 ADENO
CL2001031618AA (testset)ADENO10 ADENO
CL2001031622AAADENO0.999710.00029 ADENO
CL2001031625AA (testset)ADENO10 ADENO
CL2001031627AAADENO0.999991e-05 ADENO
CL2001031628AAADENO10 ADENO
CL2001031629AAADENO10 ADENO
CL2001031630AAADENO10 ADENO
CL2001031631AAADENO10 ADENO
CL2001031632AAADENO0.999991e-05 ADENO
CL2001031634AAADENO10 ADENO
CL2001031635AAADENO0.999991e-05 ADENO
CL2001031636AAADENO10 ADENO
CL2001032002AAADENO10 ADENO
CL2001032005AAADENO10 ADENO
CL2001032008AAADENO10 ADENO
CL2001032009AA (testset)ADENO0.999320.00068 ADENO
CL2001032011AAADENO10 ADENO
CL2001032012AA (testset)ADENO0.999991e-05 ADENO
CL2001032013AA (testset)ADENO0.999991e-05 ADENO
CL2001032015AAADENO0.948830.05117 ADENO
CL2001032016AAADENO10 ADENO
CL2001032019AAADENO10 ADENO
CL2001032020AAADENO10 ADENO
CL2001032025AAADENO10 ADENO
CL2001032026AAADENO10 ADENO
CL2001032027AA (testset)ADENO10 ADENO
CL2001032030AA (testset)ADENO10 ADENO
CL2001032031AAADENO0.999946e-05 ADENO
CL2001032032AA (testset)ADENO0.999820.00018 ADENO
CL2001032034AA (testset)ADENO0.380360.61964 NORMAL
CL2001032036AAADENO0.988740.01126 ADENO
CL2001032103AAADENO10 ADENO
CL2001032104AA (testset)ADENO10 ADENO
CL2001032105AAADENO10 ADENO
CL2001032107AAADENO10 ADENO
CL2001032108AA (testset)ADENO10 ADENO
CL2001032109AAADENO0.999860.00014 ADENO
CL2001032110AAADENO0.991680.00832 ADENO
CL2001032111AAADENO10 ADENO
CL2001032113AAADENO10 ADENO
CL2001032114AAADENO10 ADENO
CL2001032115AA (testset)ADENO10 ADENO
CL2001032116AA (testset)ADENO10 ADENO
CL2001032117AAADENO0.999991e-05 ADENO
CL2001032125AA (testset)ADENO0.999470.00053 ADENO
CL2001032130AAADENO0.997490.00251 ADENO
CL2001032132AAADENO10 ADENO
CL2001032134AA (testset)ADENO0.99991e-04 ADENO
CL2001032135AAADENO0.999840.00016 ADENO
CL2001032136AAADENO0.999955e-05 ADENO
CL2001032138AAADENO0.997380.00262 ADENO
CL2001032141AAADENO10 ADENO
CL2001032142AAADENO0.999880.00012 ADENO
CL2001032149AA (testset)ADENO0.999050.00095 ADENO
CL2001032155AA (testset)ADENO0.584140.41586 ADENO
CL2001032156AAADENO10 ADENO
CL2001032211AA (testset)ADENO10 ADENO
CL2001032212AAADENO10 ADENO
CL2001032213AAADENO0.926010.07399 ADENO
CL2001032214AAADENO0.972640.02736 ADENO
CL2001032229AAADENO10 ADENO
CL2001032232AA (testset)ADENO10 ADENO
CL2001032233AAADENO10 ADENO
CL2001032241AAADENO0.999991e-05 ADENO
CL2001032242AAADENO0.999982e-05 ADENO
CL2001032243AAADENO10 ADENO
CL2001032248AAADENO10 ADENO
CL2001032249AA (testset)ADENO0.999982e-05 ADENO
CL2001032252AAADENO10 ADENO
CL2001032254AAADENO10 ADENO
CL2001032255AAADENO10 ADENO
CL2001032259AAADENO10 ADENO
CL2001032301AA (testset)ADENO10 ADENO
CL2001032306AAADENO0.999991e-05 ADENO
CL2001032307AAADENO0.998230.00177 ADENO
CL2001032308AA (testset)ADENO10 ADENO
CL2001032309AAADENO10 ADENO
CL2001032310AA (testset)ADENO10 ADENO
CL2001032311AAADENO10 ADENO
CL2001032312AAADENO10 ADENO
CL2001032313AA (testset)ADENO10 ADENO
CL2001032314AA (testset)ADENO10 ADENO
CL2001032316AAADENO10 ADENO
CL2001032601AA (testset)ADENO0.998850.00115 ADENO
CL2001032602AA (testset)ADENO10 ADENO
CL2001032604AAADENO10 ADENO
CL2001032610AAADENO10 ADENO
CL2001032612AAADENO0.999870.00013 ADENO
CL2001032613AAADENO10 ADENO
CL2001032614AAADENO10 ADENO
CL2001032616AA (testset)ADENO10 ADENO
CL2001032617AA (testset)ADENO10 ADENO
CL2001032620AAADENO0.999991e-05 ADENO
CL2001032625AAADENO10 ADENO
CL2001032628AAADENO10 ADENO
CL2001032638AA (testset)ADENO0.999991e-05 ADENO
CL2001032640AAADENO10 ADENO
CL2001032643AA (testset)ADENO0.995840.00416 ADENO
CL2001032647AAADENO0.999973e-05 ADENO
CL2001032701AA (testset)ADENO10 ADENO
CL2001032702AAADENO10 ADENO
CL2001032703AA (testset)ADENO10 ADENO
CL2001032704AA (testset)ADENO10 ADENO
CL2001032706AAADENO0.999973e-05 ADENO
CL2001032709AAADENO0.999964e-05 ADENO
CL2001032716AAADENO10 ADENO
CL2001032717AAADENO10 ADENO
CL2001032729AAADENO10 ADENO
CL2001032730AAADENO10 ADENO
CL2001032733AA (testset)ADENO10 ADENO
CL2001032738AA (testset)ADENO10 ADENO
CL2001032742AAADENO10 ADENO
CL2001032746AAADENO10 ADENO
CL2001032747AAADENO10 ADENO
CL2001032833AA (testset)ADENO0.999430.00057 ADENO
CL2001032836AAADENO10 ADENO
CL2001032838AAADENO0.999955e-05 ADENO
CL2001032839AAADENO10 ADENO
CL2001032841AA (testset)ADENO0.999991e-05 ADENO
CL2001032842AAADENO10 ADENO
CL2001032843AA (testset)ADENO10 ADENO
CL2001032845AA (testset)ADENO10 ADENO
CL2001032846AAADENO0.99540.0046 ADENO
CL2001032848AA (testset)ADENO1e-050.99999 NORMAL
CL2001032856AAADENO0.999982e-05 ADENO
CL2001032857AAADENO0.999973e-05 ADENO
CL2001040305AA (testset)ADENO10 ADENO
CL2001040306AA (testset)ADENO10 ADENO
CL2001041708AA (testset)ADENO10 ADENO
CL2001041711AAADENO10 ADENO
CL2001041716AAADENO0.968040.03196 ADENO
CL2001042505AA (testset)ADENO10 ADENO
CL2001042506AAADENO0.99982e-04 ADENO
CL2001032010AA (testset)NORMAL0.029180.97082 NORMAL
CL2001032041AANORMAL0.006830.99317 NORMAL
CL2001032043AA (testset)NORMAL01 NORMAL
CL2001032045AANORMAL0.001030.99897 NORMAL
CL2001032046AANORMAL9e-040.9991 NORMAL
CL2001032102AANORMAL0.000120.99988 NORMAL
CL2001032128AA (testset)NORMAL8e-050.99992 NORMAL
CL2001032147AANORMAL01 NORMAL
CL2001032202AANORMAL01 NORMAL
CL2001032206AA (testset)NORMAL0.002060.99794 NORMAL
CL2001032220AANORMAL1e-050.99999 NORMAL
CL2001032256AANORMAL0.005310.99469 NORMAL
CL2001032304AANORMAL0.001570.99843 NORMAL
CL2001032718AANORMAL01 NORMAL
CL2001032724AANORMAL0.954210.04579 ADENO
CL2001032725AA (testset)NORMAL0.000230.99977 NORMAL
CL2001032727AANORMAL0.000470.99953 NORMAL

 


Generated by StAM on Tue Sep 7 17:18:30 2004