GO:0006952

GO:0006952

defense response
(annotated genes)

Biological
Process

Parent node

This leaf node contains 76 genes

The following 76 of these are used in classification:

 SymbolGenenameADENO scoreNORMAL score
32905_s_atTPS1 tryptase, alpha-0.19191.4871
596_s_atCSF3R colony stimulating factor 3 receptor (granulocyte)-0.12870.9972
37536_atCD83 CD83 antigen (activated B lymphocytes, immunoglobulin superfamily)-0.12490.9676
34223_atCSF3R colony stimulating factor 3 receptor (granulocyte)-0.10950.8484
37645_atCD69 CD69 antigen (p60, early T-cell activation antigen)-0.10860.8413
38893_atNCF4 neutrophil cytosolic factor 4, 40kDa-0.09860.7643
1100_atIRAK1 interleukin-1 receptor-associated kinase 10.0921-0.7134
38894_g_atNCF4 neutrophil cytosolic factor 4, 40kDa-0.08660.6709
41106_atKCNN4 potassium intermediate/small conductance calcium-activated channel, subfamily N, member 40.0832-0.6447
38963_i_atWAS Wiskott-Aldrich syndrome (eczema-thrombocytopenia)-0.08260.6403
31477_atTFF3 trefoil factor 3 (intestinal)0.0819-0.6348
38017_atCD79A CD79A antigen (immunoglobulin-associated alpha)0.0804-0.6229
40374_atANKRD1 ankyrin repeat domain 1 (cardiac muscle)-0.07770.6021
37897_s_atTFF3 trefoil factor 3 (intestinal)0.0714-0.553
38545_atINHBB inhibin, beta B (activin AB beta polypeptide)0.0705-0.5463
1317_atMST1R macrophage stimulating 1 receptor (c-met-related tyrosine kinase)0.07-0.5427
37127_atNALP1 NACHT, leucine rich repeat and PYD containing 1-0.06840.5304
38018_g_atCD79A CD79A antigen (immunoglobulin-associated alpha)0.0622-0.4819
32049_f_atTCEB3 transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)-0.06110.4733
31798_atTFF1 trefoil factor 1 (breast cancer, estrogen-inducible sequence expressed in)0.0589-0.4564
38233_atHOMER3 homer homolog 3 (Drosophila)0.0544-0.4214
34660_atRNASE6 ribonuclease, RNase A family, k6-0.05390.418
41763_g_atTIAL1 TIA1 cytotoxic granule-associated RNA binding protein-like 10.0527-0.4086
38964_r_atWAS Wiskott-Aldrich syndrome (eczema-thrombocytopenia)-0.05160.4002
37719_atMLF2 myeloid leukemia factor 20.0439-0.3405
35764_atOFD1 oral-facial-digital syndrome 10.0422-0.3272
31787_atCAMLG calcium modulating ligand-0.04070.3152
33208_atDNAJC3 DnaJ (Hsp40) homolog, subfamily C, member 30.0395-0.3063
32050_r_atTCEB3 transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)-0.03810.2951
38006_atCD48 CD48 antigen (B-cell membrane protein)-0.03720.2885
39393_r_atAPOH apolipoprotein H (beta-2-glycoprotein I)-0.03390.263
1770_atIFNA2 interferon, alpha 2-0.0330.2555
1022_f_atIFNA14 interferon, alpha 14-0.03240.251
38672_atPPP1R10 protein phosphatase 1, regulatory subunit 10-0.03170.2456
639_s_atTCEB3 transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)-0.03050.2365
32825_atHRMT1L2 HMT1 hnRNP methyltransferase-like 2 (S. cerevisiae)-0.03020.2344
1541_f_atIFNA6 interferon, alpha 6-0.02990.2315
39285_atPCYT1A phosphate cytidylyltransferase 1, choline, alpha isoform0.0293-0.2274
1791_s_atIFNA2 interferon, alpha 2-0.02930.2267
AFFX-MurIL2_atIl2 interleukin 2-0.02540.1966
1580_f_atIFNA4 interferon, alpha 4-0.0250.1937
1075_f_atIFNA16 interferon, alpha 16-0.02320.1798
37360_atLY6E lymphocyte antigen 6 complex, locus E0.0229-0.1778
37898_r_atTFF3 trefoil factor 3 (intestinal)0.0229-0.1776
33284_atMPO myeloperoxidase-0.02280.1766
427_f_atIFNA10 interferon, alpha 10-0.02270.1758
1203_atINHBA inhibin, beta A (activin A, activin AB alpha polypeptide)-0.02130.165
33320_atHCP5 HLA complex P50.021-0.163
39958_atSOCS6 suppressor of cytokine signaling 6-0.02090.162
32070_atPTPRCAP protein tyrosine phosphatase, receptor type, C-associated protein0.0202-0.1567
31442_atPSG3 pregnancy specific beta-1-glycoprotein 30.0193-0.1496
40511_atGATA3 GATA binding protein 3-0.01760.1362
41762_atTIAL1 TIA1 cytotoxic granule-associated RNA binding protein-like 10.0174-0.1346
1435_f_atIFNA21 interferon, alpha 21-0.01730.1338
33489_atTFF2 trefoil factor 2 (spasmolytic protein 1)0.0155-0.12
682_atIFNA8 interferon, alpha 80.0142-0.1097
38180_f_atPSG9 pregnancy specific beta-1-glycoprotein 90.0139-0.1075
38895_i_atNCF4 neutrophil cytosolic factor 4, 40kDa-0.01310.1014
1540_f_atIFNA5 interferon, alpha 5-0.01280.099
35550_atPCYT1B phosphate cytidylyltransferase 1, choline, beta isoform0.0117-0.0905
40700_atSP140 SP140 nuclear body protein0.0112-0.0866
1214_s_atIFNB1 interferon, beta 1, fibroblast-0.01110.0858
31980_atFOXN1 forkhead box N10.0101-0.0785
40857_f_atPSG3 pregnancy specific beta-1-glycoprotein 30.0089-0.0687
37896_atTFF3 trefoil factor 3 (intestinal)0.0081-0.0631
745_atTCEA2 transcription elongation factor A (SII), 2-0.0060.0462
37856_atCD84 CD84 antigen (leukocyte antigen)0.0055-0.0424
38575_atMALT1 mucosa associated lymphoid tissue lymphoma translocation gene 10.0052-0.0401
35551_g_atPCYT1B phosphate cytidylyltransferase 1, choline, beta isoform0.0051-0.0395
33969_atIFNW1 interferon, omega 1-0.00510.0394
32415_atIFNA5 interferon, alpha 5-0.0050.0385
35552_atPCYT1B phosphate cytidylyltransferase 1, choline, beta isoform0.0047-0.0362
41761_atTIAL1 TIA1 cytotoxic granule-associated RNA binding protein-like 1-0.00360.0278
40357_atINHBA inhibin, beta A (activin A, activin AB alpha polypeptide)0.0027-0.0207
32350_atMALT1 mucosa associated lymphoid tissue lymphoma translocation gene 1-0.00260.0199
39020_atSIVA CD27-binding (Siva) protein-6e-040.0049

Performance on training data

 SensitivitySpecificity
ADENO0.989251
NORMAL10.98925

Performance on test data

 SensitivitySpecificity
ADENO0.913040.8
NORMAL0.80.91304

Predictions

 ClassADENONORMALPredictionn
CL2001031608AAADENO0.985430.01457 ADENO
CL2001031611AA (testset)ADENO0.997910.00209 ADENO
CL2001031612AAADENO10 ADENO
CL2001031613AAADENO0.952410.04759 ADENO
CL2001031615AAADENO10 ADENO
CL2001031616AAADENO0.997910.00209 ADENO
CL2001031618AA (testset)ADENO0.99010.0099 ADENO
CL2001031622AAADENO10 ADENO
CL2001031625AA (testset)ADENO10 ADENO
CL2001031627AAADENO0.999730.00027 ADENO
CL2001031628AAADENO0.999964e-05 ADENO
CL2001031629AAADENO10 ADENO
CL2001031630AAADENO0.99982e-04 ADENO
CL2001031631AAADENO10 ADENO
CL2001031632AAADENO10 ADENO
CL2001031634AAADENO10 ADENO
CL2001031635AAADENO0.999991e-05 ADENO
CL2001031636AAADENO10 ADENO
CL2001032002AAADENO10 ADENO
CL2001032005AAADENO10 ADENO
CL2001032008AAADENO10 ADENO
CL2001032009AA (testset)ADENO10 ADENO
CL2001032011AAADENO0.986390.01361 ADENO
CL2001032012AA (testset)ADENO0.787830.21217 ADENO
CL2001032013AA (testset)ADENO0.998580.00142 ADENO
CL2001032015AAADENO0.999964e-05 ADENO
CL2001032016AAADENO10 ADENO
CL2001032019AAADENO0.999991e-05 ADENO
CL2001032020AAADENO10 ADENO
CL2001032025AAADENO10 ADENO
CL2001032026AAADENO0.986220.01378 ADENO
CL2001032027AA (testset)ADENO0.996030.00397 ADENO
CL2001032030AA (testset)ADENO10 ADENO
CL2001032031AAADENO0.989240.01076 ADENO
CL2001032032AA (testset)ADENO0.081380.91862 NORMAL
CL2001032034AA (testset)ADENO0.002440.99756 NORMAL
CL2001032036AAADENO0.999937e-05 ADENO
CL2001032103AAADENO0.9990.001 ADENO
CL2001032104AA (testset)ADENO10 ADENO
CL2001032105AAADENO10 ADENO
CL2001032107AAADENO10 ADENO
CL2001032108AA (testset)ADENO0.998490.00151 ADENO
CL2001032109AAADENO0.889220.11078 ADENO
CL2001032110AAADENO0.991010.00899 ADENO
CL2001032111AAADENO0.99991e-04 ADENO
CL2001032113AAADENO10 ADENO
CL2001032114AAADENO0.999570.00043 ADENO
CL2001032115AA (testset)ADENO0.999982e-05 ADENO
CL2001032116AA (testset)ADENO10 ADENO
CL2001032117AAADENO0.999440.00056 ADENO
CL2001032125AA (testset)ADENO10 ADENO
CL2001032130AAADENO0.999991e-05 ADENO
CL2001032132AAADENO10 ADENO
CL2001032134AA (testset)ADENO0.999770.00023 ADENO
CL2001032135AAADENO0.72890.2711 ADENO
CL2001032136AAADENO0.999750.00025 ADENO
CL2001032138AAADENO0.999260.00074 ADENO
CL2001032141AAADENO10 ADENO
CL2001032142AAADENO0.999230.00077 ADENO
CL2001032149AA (testset)ADENO0.963230.03677 ADENO
CL2001032155AA (testset)ADENO3e-050.99997 NORMAL
CL2001032156AAADENO0.999480.00052 ADENO
CL2001032211AA (testset)ADENO0.999991e-05 ADENO
CL2001032212AAADENO10 ADENO
CL2001032213AAADENO0.844010.15599 ADENO
CL2001032214AAADENO0.995230.00477 ADENO
CL2001032229AAADENO10 ADENO
CL2001032232AA (testset)ADENO10 ADENO
CL2001032233AAADENO10 ADENO
CL2001032241AAADENO0.999790.00021 ADENO
CL2001032242AAADENO0.999937e-05 ADENO
CL2001032243AAADENO0.999310.00069 ADENO
CL2001032248AAADENO10 ADENO
CL2001032249AA (testset)ADENO0.946020.05398 ADENO
CL2001032252AAADENO10 ADENO
CL2001032254AAADENO0.999973e-05 ADENO
CL2001032255AAADENO0.999991e-05 ADENO
CL2001032259AAADENO0.99991e-04 ADENO
CL2001032301AA (testset)ADENO0.999330.00067 ADENO
CL2001032306AAADENO0.999860.00014 ADENO
CL2001032307AAADENO0.994570.00543 ADENO
CL2001032308AA (testset)ADENO0.999937e-05 ADENO
CL2001032309AAADENO0.99955e-04 ADENO
CL2001032310AA (testset)ADENO10 ADENO
CL2001032311AAADENO10 ADENO
CL2001032312AAADENO0.999964e-05 ADENO
CL2001032313AA (testset)ADENO10 ADENO
CL2001032314AA (testset)ADENO0.999110.00089 ADENO
CL2001032316AAADENO0.999982e-05 ADENO
CL2001032601AA (testset)ADENO0.999991e-05 ADENO
CL2001032602AA (testset)ADENO10 ADENO
CL2001032604AAADENO0.999991e-05 ADENO
CL2001032610AAADENO10 ADENO
CL2001032612AAADENO0.998170.00183 ADENO
CL2001032613AAADENO0.999991e-05 ADENO
CL2001032614AAADENO10 ADENO
CL2001032616AA (testset)ADENO0.998230.00177 ADENO
CL2001032617AA (testset)ADENO0.999973e-05 ADENO
CL2001032620AAADENO0.973060.02694 ADENO
CL2001032625AAADENO10 ADENO
CL2001032628AAADENO0.999982e-05 ADENO
CL2001032638AA (testset)ADENO10 ADENO
CL2001032640AAADENO10 ADENO
CL2001032643AA (testset)ADENO0.999991e-05 ADENO
CL2001032647AAADENO0.597220.40278 ADENO
CL2001032701AA (testset)ADENO10 ADENO
CL2001032702AAADENO10 ADENO
CL2001032703AA (testset)ADENO10 ADENO
CL2001032704AA (testset)ADENO0.999991e-05 ADENO
CL2001032706AAADENO0.99630.0037 ADENO
CL2001032709AAADENO10 ADENO
CL2001032716AAADENO0.999840.00016 ADENO
CL2001032717AAADENO10 ADENO
CL2001032729AAADENO0.999750.00025 ADENO
CL2001032730AAADENO10 ADENO
CL2001032733AA (testset)ADENO0.992250.00775 ADENO
CL2001032738AA (testset)ADENO0.999982e-05 ADENO
CL2001032742AAADENO0.999973e-05 ADENO
CL2001032746AAADENO10 ADENO
CL2001032747AAADENO0.999955e-05 ADENO
CL2001032833AA (testset)ADENO0.999991e-05 ADENO
CL2001032836AAADENO0.999991e-05 ADENO
CL2001032838AAADENO10 ADENO
CL2001032839AAADENO0.999720.00028 ADENO
CL2001032841AA (testset)ADENO0.999991e-05 ADENO
CL2001032842AAADENO10 ADENO
CL2001032843AA (testset)ADENO10 ADENO
CL2001032845AA (testset)ADENO0.993950.00605 ADENO
CL2001032846AAADENO0.999720.00028 ADENO
CL2001032848AA (testset)ADENO0.006760.99324 NORMAL
CL2001032856AAADENO10 ADENO
CL2001032857AAADENO0.995240.00476 ADENO
CL2001040305AA (testset)ADENO10 ADENO
CL2001040306AA (testset)ADENO0.991430.00857 ADENO
CL2001041708AA (testset)ADENO0.95870.0413 ADENO
CL2001041711AAADENO0.999530.00047 ADENO
CL2001041716AAADENO0.97820.0218 ADENO
CL2001042505AA (testset)ADENO10 ADENO
CL2001042506AAADENO0.099840.90016 NORMAL
CL2001032010AA (testset)NORMAL0.70810.2919 ADENO
CL2001032041AANORMAL01 NORMAL
CL2001032043AA (testset)NORMAL0.000510.99949 NORMAL
CL2001032045AANORMAL0.003180.99682 NORMAL
CL2001032046AANORMAL0.000290.99971 NORMAL
CL2001032102AANORMAL0.0210.979 NORMAL
CL2001032128AA (testset)NORMAL0.025770.97423 NORMAL
CL2001032147AANORMAL0.012440.98756 NORMAL
CL2001032202AANORMAL0.003610.99639 NORMAL
CL2001032206AA (testset)NORMAL1e-050.99999 NORMAL
CL2001032220AANORMAL0.00580.9942 NORMAL
CL2001032256AANORMAL0.001450.99855 NORMAL
CL2001032304AANORMAL0.106530.89347 NORMAL
CL2001032718AANORMAL1e-050.99999 NORMAL
CL2001032724AANORMAL0.110440.88956 NORMAL
CL2001032725AA (testset)NORMAL0.087430.91257 NORMAL
CL2001032727AANORMAL0.000190.99981 NORMAL

 

Generated by StAM on Tue Sep 7 17:18:25 2004