GO:0009653


GO:0009653

morphogenesis
(annotated genes)

Biological
Process

Parent node

This leaf node contains 99 genes

The following 64 of these are used in classification:

 SymbolGenenameADENO scoreother score
38918_atSOX13 SRY (sex determining region Y)-box 13-0.23560.5117
1237_atIER3 immediate early response 30.2147-0.4662
897_atPKD1 polycystic kidney disease 1 (autosomal dominant)-0.19940.433
38439_atNFE2L1 nuclear factor (erythroid-derived 2)-like 1-0.18550.4029
36508_atGPC4 glypican 40.1707-0.3708
39350_atGPC3 glypican 3-0.16970.3687
36702_atTBX19 T-box 19-0.16750.3638
36708_atCPM carboxypeptidase M0.1646-0.3574
40445_atELF3 E74-like factor 3 (ets domain transcription factor, epithelial-specific )0.1385-0.3008
37920_atPITX1 paired-like homeodomain transcription factor 1-0.13350.29
32706_atHIRA HIR histone cell cycle regulation defective homolog A (S. cerevisiae)-0.12740.2767
34296_atMID1 midline 1 (Opitz/BBB syndrome)-0.12260.2663
38772_atCYR61 cysteine-rich, angiogenic inducer, 610.1114-0.2418
32521_atSFRP1 secreted frizzled-related protein 1-0.09340.2027
40454_atFAT FAT tumor suppressor homolog 1 (Drosophila)-0.08980.195
34490_f_atFSCN2 fascin homolog 2, actin-bundling protein, retinal (Strongylocentrotus purpuratus)0.0882-0.1915
33128_s_atCST6 cystatin E/M0.0852-0.185
33558_atTBX5 T-box 5-0.08040.1747
31851_atRFP2 ret finger protein 2-0.08030.1743
34986_atEVA1 epithelial V-like antigen 10.0789-0.1713
163_atDVL1 dishevelled, dsh homolog 1 (Drosophila)0.0717-0.1557
34891_atDNCL1 dynein, cytoplasmic, light polypeptide 1-0.06650.1444
31602_atTBX6 T-box 60.0555-0.1206
36370_atFOXE1 forkhead box E1 (thyroid transcription factor 2)-0.05430.1179
33565_atTSHB thyroid stimulating hormone, beta-0.05280.1148
1886_atWNT7A wingless-type MMTV integration site family, member 7A0.0507-0.1102
40328_atTWIST1 twist homolog 1 (acrocephalosyndactyly 3; Saethre-Chotzen syndrome) (Drosophila)0.0431-0.0936
33129_atCST6 cystatin E/M0.0427-0.0928
41427_atWNT11 wingless-type MMTV integration site family, member 110.0407-0.0883
1853_atWNT1 wingless-type MMTV integration site family, member 10.0365-0.0792
205_g_atHOXA4 homeo box A4-0.03550.0772
37139_atED1 ectodermal dysplasia 1, anhidrotic-0.03430.0744
41586_atFGF18 fibroblast growth factor 180.0314-0.0682
39605_atFOXG1B forkhead box G1B-0.02960.0643
31669_s_atHOXA11 homeo box A110.0274-0.0594
34058_atZNF141 zinc finger protein 141 (clone pHZ-44)-0.02710.0588
836_atPTCH patched homolog (Drosophila)-0.02420.0525
38181_atMMP11 matrix metalloproteinase 11 (stromelysin 3)0.0227-0.0493
40403_atMYOC myocilin, trabecular meshwork inducible glucocorticoid response-0.02270.0493
2050_s_atRAC1 ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)0.0205-0.0446
32474_atPAX7 paired box gene 70.0203-0.0441
33684_atWNT2B wingless-type MMTV integration site family, member 2B-0.0190.0412
204_atHOXA4 homeo box A4-0.01840.0399
1525_s_atFGF8 fibroblast growth factor 8 (androgen-induced)0.0182-0.0394
39297_atMAB21L1 mab-21-like 1 (C. elegans)-0.01760.0381
996_atFGF1 fibroblast growth factor 1 (acidic)-0.01690.0366
2030_atWNT11 wingless-type MMTV integration site family, member 110.0156-0.0339
36693_atEYA3 eyes absent homolog 3 (Drosophila)-0.01530.0333
380_atTBX5 T-box 5-0.01270.0275
38959_s_atCASR calcium-sensing receptor (hypocalciuric hypercalcemia 1, severe neonatal hyperparathyroidism)0.0104-0.0226
39808_atWNT11 wingless-type MMTV integration site family, member 11-0.00930.0202
160040_atEDN3 endothelin 3-0.00810.0177
33330_atCLTCL1 clathrin, heavy polypeptide-like 1-0.00810.0176
34251_atHOXB5 homeo box B5-0.00750.0164
37865_atEDN3 endothelin 3-0.00580.0125
34631_atEYA4 eyes absent homolog 4 (Drosophila)-0.00540.0118
35865_atNR5A2 nuclear receptor subfamily 5, group A, member 20.0049-0.0107
31620_atTBX10 T-box 100.0048-0.0105
1902_atERCC1 excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence)0.0028-0.006
38988_atWHSC1 Wolf-Hirschhorn syndrome candidate 10.0026-0.0056
1878_g_atERCC1 excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence)0.0014-0.0029
40393_atHOXA4 homeo box A4-7e-040.0014
41869_atPES1 pescadillo homolog 1, containing BRCT domain (zebrafish)6e-04-0.0014
37073_atEYA1 eyes absent homolog 1 (Drosophila)-3e-047e-04

Performance on training data

 SensitivitySpecificity
ADENO0.964030.79688
other0.796880.96403

Performance on test data

 SensitivitySpecificity
ADENO0.964030.79688
other0.796880.96403

Predictions

 ClassADENOotherPredictionn
CL2001031606AA (testset)other0.025590.97441 other
CL2001031607AA (testset)other0.642740.35726 ADENO
CL2001031608AA (testset)ADENO0.950220.04978 ADENO
CL2001031609AA (testset)other0.010510.98949 other
CL2001031611AA (testset)ADENO0.829280.17072 ADENO
CL2001031612AA (testset)ADENO0.900880.09912 ADENO
CL2001031613AA (testset)ADENO0.963960.03604 ADENO
CL2001031615AA (testset)ADENO0.951740.04826 ADENO
CL2001031616AA (testset)ADENO0.722320.27768 ADENO
CL2001031618AA (testset)ADENO0.989680.01032 ADENO
CL2001031620AA (testset)other0.050040.94996 other
CL2001031621AA (testset)other0.219760.78024 other
CL2001031622AA (testset)ADENO0.180240.81976 other
CL2001031625AA (testset)ADENO0.985940.01406 ADENO
CL2001031627AA (testset)ADENO0.983670.01633 ADENO
CL2001031628AA (testset)ADENO0.995250.00475 ADENO
CL2001031629AA (testset)ADENO0.861890.13811 ADENO
CL2001031630AA (testset)ADENO0.995980.00402 ADENO
CL2001031631AA (testset)ADENO0.998080.00192 ADENO
CL2001031632AA (testset)ADENO0.784830.21517 ADENO
CL2001031634AA (testset)ADENO0.998080.00192 ADENO
CL2001031635AA (testset)ADENO0.990520.00948 ADENO
CL2001031636AA (testset)ADENO0.922980.07702 ADENO
CL2001032002AA (testset)ADENO0.7410.259 ADENO
CL2001032005AA (testset)ADENO0.907740.09226 ADENO
CL2001032008AA (testset)ADENO0.982550.01745 ADENO
CL2001032009AA (testset)ADENO0.975290.02471 ADENO
CL2001032010AA (testset)other0.910760.08924 ADENO
CL2001032011AA (testset)ADENO0.978670.02133 ADENO
CL2001032012AA (testset)ADENO0.99964e-04 ADENO
CL2001032013AA (testset)ADENO0.960460.03954 ADENO
CL2001032015AA (testset)ADENO0.585510.41449 ADENO
CL2001032016AA (testset)ADENO0.99310.0069 ADENO
CL2001032019AA (testset)ADENO0.988620.01138 ADENO
CL2001032020AA (testset)ADENO0.98360.0164 ADENO
CL2001032025AA (testset)ADENO0.942760.05724 ADENO
CL2001032026AA (testset)ADENO0.991230.00877 ADENO
CL2001032027AA (testset)ADENO0.960680.03932 ADENO
CL2001032030AA (testset)ADENO0.889550.11045 ADENO
CL2001032031AA (testset)ADENO0.883310.11669 ADENO
CL2001032032AA (testset)ADENO0.970680.02932 ADENO
CL2001032034AA (testset)ADENO0.383870.61613 other
CL2001032036AA (testset)ADENO0.018580.98142 other
CL2001032041AA (testset)other0.229110.77089 other
CL2001032043AA (testset)other0.072750.92725 other
CL2001032044AA (testset)other0.00140.9986 other
CL2001032045AA (testset)other0.155890.84411 other
CL2001032046AA (testset)other0.232960.76704 other
CL2001032101AA (testset)other0.032440.96756 other
CL2001032102AA (testset)other0.537180.46282 ADENO
CL2001032103AA (testset)ADENO0.99410.0059 ADENO
CL2001032104AA (testset)ADENO0.981170.01883 ADENO
CL2001032105AA (testset)ADENO0.985470.01453 ADENO
CL2001032107AA (testset)ADENO0.980680.01932 ADENO
CL2001032108AA (testset)ADENO0.992760.00724 ADENO
CL2001032109AA (testset)ADENO0.994680.00532 ADENO
CL2001032110AA (testset)ADENO0.994710.00529 ADENO
CL2001032111AA (testset)ADENO0.997930.00207 ADENO
CL2001032113AA (testset)ADENO0.910370.08963 ADENO
CL2001032114AA (testset)ADENO0.985840.01416 ADENO
CL2001032115AA (testset)ADENO0.991260.00874 ADENO
CL2001032116AA (testset)ADENO0.988920.01108 ADENO
CL2001032117AA (testset)ADENO0.944890.05511 ADENO
CL2001032121AA (testset)other0.021430.97857 other
CL2001032122AA (testset)other0.150380.84962 other
CL2001032124AA (testset)other0.011480.98852 other
CL2001032125AA (testset)ADENO0.813420.18658 ADENO
CL2001032127AA (testset)other0.05690.9431 other
CL2001032128AA (testset)other0.058660.94134 other
CL2001032129AA (testset)other0.003440.99656 other
CL2001032130AA (testset)ADENO0.984520.01548 ADENO
CL2001032132AA (testset)ADENO0.936530.06347 ADENO
CL2001032134AA (testset)ADENO0.863460.13654 ADENO
CL2001032135AA (testset)ADENO0.930580.06942 ADENO
CL2001032136AA (testset)ADENO0.951180.04882 ADENO
CL2001032138AA (testset)ADENO0.990860.00914 ADENO
CL2001032141AA (testset)ADENO0.910120.08988 ADENO
CL2001032142AA (testset)ADENO0.076440.92356 other
CL2001032144AA (testset)other0.213630.78637 other
CL2001032145AA (testset)other0.011350.98865 other
CL2001032147AA (testset)other0.583860.41614 ADENO
CL2001032149AA (testset)ADENO0.921450.07855 ADENO
CL2001032151AA (testset)other0.003250.99675 other
CL2001032152AA (testset)other0.05760.9424 other
CL2001032153AA (testset)other0.015830.98417 other
CL2001032155AA (testset)ADENO0.808630.19137 ADENO
CL2001032156AA (testset)ADENO0.660420.33958 ADENO
CL2001032202AA (testset)other0.150980.84902 other
CL2001032206AA (testset)other0.568620.43138 ADENO
CL2001032207AA (testset)other0.009240.99076 other
CL2001032209AA (testset)other0.008460.99154 other
CL2001032210AA (testset)other0.000650.99935 other
CL2001032211AA (testset)ADENO0.954490.04551 ADENO
CL2001032212AA (testset)ADENO0.93870.0613 ADENO
CL2001032213AA (testset)ADENO0.78180.2182 ADENO
CL2001032214AA (testset)ADENO0.699990.30001 ADENO
CL2001032217AA (testset)other0.405870.59413 other
CL2001032218AA (testset)other0.49910.5009 other
CL2001032219AA (testset)other0.351720.64828 other
CL2001032220AA (testset)other0.82340.1766 ADENO
CL2001032222AA (testset)other0.441910.55809 other
CL2001032229AA (testset)ADENO0.967860.03214 ADENO
CL2001032231AA (testset)other0.54190.4581 ADENO
CL2001032232AA (testset)ADENO0.993960.00604 ADENO
CL2001032233AA (testset)ADENO0.99580.0042 ADENO
CL2001032238AA (testset)other0.089250.91075 other
CL2001032239AA (testset)other0.007780.99222 other
CL2001032240AA (testset)other0.123640.87636 other
CL2001032241AA (testset)ADENO0.993080.00692 ADENO
CL2001032242AA (testset)ADENO0.988750.01125 ADENO
CL2001032243AA (testset)ADENO0.980660.01934 ADENO
CL2001032248AA (testset)ADENO0.960150.03985 ADENO
CL2001032249AA (testset)ADENO0.993510.00649 ADENO
CL2001032252AA (testset)ADENO0.991170.00883 ADENO
CL2001032254AA (testset)ADENO0.999190.00081 ADENO
CL2001032255AA (testset)ADENO0.922970.07703 ADENO
CL2001032256AA (testset)other0.923590.07641 ADENO
CL2001032259AA (testset)ADENO0.767930.23207 ADENO
CL2001032260AA (testset)other0.367510.63249 other
CL2001032301AA (testset)ADENO0.681610.31839 ADENO
CL2001032304AA (testset)other0.380060.61994 other
CL2001032305AA (testset)other0.526630.47337 ADENO
CL2001032306AA (testset)ADENO0.942090.05791 ADENO
CL2001032307AA (testset)ADENO0.818750.18125 ADENO
CL2001032308AA (testset)ADENO0.935380.06462 ADENO
CL2001032309AA (testset)ADENO0.956880.04312 ADENO
CL2001032310AA (testset)ADENO0.91440.0856 ADENO
CL2001032311AA (testset)ADENO0.988160.01184 ADENO
CL2001032312AA (testset)ADENO0.995760.00424 ADENO
CL2001032313AA (testset)ADENO0.918840.08116 ADENO
CL2001032314AA (testset)ADENO0.902160.09784 ADENO
CL2001032316AA (testset)ADENO0.953590.04641 ADENO
CL2001032601AA (testset)ADENO0.996280.00372 ADENO
CL2001032602AA (testset)ADENO0.990930.00907 ADENO
CL2001032604AA (testset)ADENO0.993580.00642 ADENO
CL2001032607AA (testset)other0.02250.9775 other
CL2001032608AA (testset)other0.218580.78142 other
CL2001032610AA (testset)ADENO0.936050.06395 ADENO
CL2001032612AA (testset)ADENO0.996950.00305 ADENO
CL2001032613AA (testset)ADENO0.958290.04171 ADENO
CL2001032614AA (testset)ADENO0.978420.02158 ADENO
CL2001032616AA (testset)ADENO0.922580.07742 ADENO
CL2001032617AA (testset)ADENO0.776870.22313 ADENO
CL2001032620AA (testset)ADENO0.993050.00695 ADENO
CL2001032625AA (testset)ADENO0.981070.01893 ADENO
CL2001032627AA (testset)other0.213570.78643 other
CL2001032628AA (testset)ADENO0.993240.00676 ADENO
CL2001032629AA (testset)other0.092250.90775 other
CL2001032630AA (testset)other0.012730.98727 other
CL2001032632AA (testset)other0.348990.65101 other
CL2001032638AA (testset)ADENO0.79340.2066 ADENO
CL2001032640AA (testset)ADENO0.957870.04213 ADENO
CL2001032643AA (testset)ADENO0.932350.06765 ADENO
CL2001032644AA (testset)other0.064520.93548 other
CL2001032647AA (testset)ADENO0.988340.01166 ADENO
CL2001032701AA (testset)ADENO0.969240.03076 ADENO
CL2001032702AA (testset)ADENO0.992760.00724 ADENO
CL2001032703AA (testset)ADENO0.984150.01585 ADENO
CL2001032704AA (testset)ADENO0.929650.07035 ADENO
CL2001032706AA (testset)ADENO0.986130.01387 ADENO
CL2001032709AA (testset)ADENO0.984860.01514 ADENO
CL2001032716AA (testset)ADENO0.711540.28846 ADENO
CL2001032717AA (testset)ADENO0.989860.01014 ADENO
CL2001032718AA (testset)other0.050240.94976 other
CL2001032719AA (testset)other0.507150.49285 ADENO
CL2001032720AA (testset)other0.308930.69107 other
CL2001032722AA (testset)other0.000480.99952 other
CL2001032724AA (testset)other0.80010.1999 ADENO
CL2001032725AA (testset)other0.194280.80572 other
CL2001032727AA (testset)other0.861460.13854 ADENO
CL2001032729AA (testset)ADENO0.989920.01008 ADENO
CL2001032730AA (testset)ADENO0.969470.03053 ADENO
CL2001032732AA (testset)other0.3390.661 other
CL2001032733AA (testset)ADENO0.993430.00657 ADENO
CL2001032738AA (testset)ADENO0.979880.02012 ADENO
CL2001032742AA (testset)ADENO0.904150.09585 ADENO
CL2001032746AA (testset)ADENO0.986520.01348 ADENO
CL2001032747AA (testset)ADENO0.836320.16368 ADENO
CL2001032833AA (testset)ADENO0.981040.01896 ADENO
CL2001032836AA (testset)ADENO0.985640.01436 ADENO
CL2001032838AA (testset)ADENO0.978640.02136 ADENO
CL2001032839AA (testset)ADENO0.831450.16855 ADENO
CL2001032841AA (testset)ADENO0.998120.00188 ADENO
CL2001032842AA (testset)ADENO0.982120.01788 ADENO
CL2001032843AA (testset)ADENO0.975080.02492 ADENO
CL2001032845AA (testset)ADENO0.970830.02917 ADENO
CL2001032846AA (testset)ADENO0.995860.00414 ADENO
CL2001032847AA (testset)other0.002070.99793 other
CL2001032848AA (testset)ADENO0.451420.54858 other
CL2001032850AA (testset)other0.002850.99715 other
CL2001032853AA (testset)other0.079750.92025 other
CL2001032854AA (testset)other0.612120.38788 ADENO
CL2001032856AA (testset)ADENO0.957530.04247 ADENO
CL2001032857AA (testset)ADENO0.994990.00501 ADENO
CL2001032860AA (testset)other0.001270.99873 other
CL2001040305AA (testset)ADENO0.967850.03215 ADENO
CL2001040306AA (testset)ADENO0.975420.02458 ADENO
CL2001041708AA (testset)ADENO0.990210.00979 ADENO
CL2001041711AA (testset)ADENO0.994540.00546 ADENO
CL2001041716AA (testset)ADENO0.997580.00242 ADENO
CL2001042501AA (testset)other0.00480.9952 other
CL2001042505AA (testset)ADENO0.980890.01911 ADENO
CL2001042506AA (testset)ADENO0.971990.02801 ADENO

 


Generated by StAM on Tue Sep 7 18:09:30 2004