GO:0007399


GO:0007399

neurogenesis
(annotated genes)

Biological
Process

Parent node

This leaf node contains 223 genes

The following 94 of these are used in classification:

 SymbolGenenameADENO scoreother score
40272_atCRMP1 collapsin response mediator protein 1-0.29810.6475
35414_s_atJAG1 jagged 1 (Alagille syndrome)-0.27470.5966
38124_atMDK midkine (neurite growth-promoting factor 2)0.2527-0.5487
577_atMDK midkine (neurite growth-promoting factor 2)0.249-0.5407
33178_atJAG1 jagged 1 (Alagille syndrome)-0.22560.4901
37210_atINA internexin neuronal intermediate filament protein, alpha-0.21940.4764
40567_atTUBA3 tubulin, alpha 3-0.21270.4619
36042_atNTRK2 neurotrophic tyrosine kinase, receptor, type 2-0.17380.3775
469_atEFNB3 ephrin-B3-0.15190.3298
36148_atAPLP1 amyloid beta (A4) precursor-like protein 1-0.14830.3221
37743_atFEZ1 fasciculation and elongation protein zeta 1 (zygin I)-0.140.3041
33182_atNTRK2 neurotrophic tyrosine kinase, receptor, type 2-0.13950.303
37363_atMTSS1 metastasis suppressor 1-0.13770.299
36873_atVLDLR very low density lipoprotein receptor-0.12940.281
40607_atDPYSL2 dihydropyrimidinase-like 2-0.1240.2693
36394_atLY6H lymphocyte antigen 6 complex, locus H-0.12030.2613
36029_atC11orf8 chromosome 11 open reading frame 8-0.11610.2522
36061_atSEMA5A sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A-0.11540.2507
32717_atNEURL neuralized-like (Drosophila)-0.110.239
36149_atDPYSL3 dihydropyrimidinase-like 3-0.10720.2328
38551_atL1CAM L1 cell adhesion molecule (hydrocephalus, stenosis of aqueduct of Sylvius 1, MASA (mental retardation, aphasia, shuffling gait and adducted thumbs) syndrome, spastic paraplegia 1)-0.10230.2222
41087_atDLX5 distal-less homeo box 5-0.09350.2031
34701_atDLG4 discs, large homolog 4 (Drosophila)-0.08970.1947
38855_s_atOLFM1 olfactomedin 1-0.08930.1938
1673_atNGFR nerve growth factor receptor (TNFR superfamily, member 16)-0.0880.1911
36134_atOLFM1 olfactomedin 1-0.0850.1846
39542_atENC1 ectodermal-neural cortex (with BTB-like domain)0.0774-0.168
36158_atDCTN1 dynactin 1 (p150, glued homolog, Drosophila)-0.07490.1628
41475_atNINJ1 ninjurin 10.0742-0.1612
1355_g_atNTRK2 neurotrophic tyrosine kinase, receptor, type 2-0.07370.1601
38280_s_atNTRK2 neurotrophic tyrosine kinase, receptor, type 2-0.07330.1593
1198_atEDNRB endothelin receptor type B-0.07280.158
38499_s_atMOBP myelin-associated oligodendrocyte basic protein0.0673-0.1463
40873_atDVL3 dishevelled, dsh homolog 3 (Drosophila)-0.0650.1412
40543_atASCL1 achaete-scute complex-like 1 (Drosophila)-0.06430.1397
32574_atSMPD1 sphingomyelin phosphodiesterase 1, acid lysosomal (acid sphingomyelinase)-0.05950.1292
41705_atRFNG radical fringe homolog (Drosophila)0.0574-0.1246
115_atTHBS1 thrombospondin 10.0553-0.12
40023_atBDNF brain-derived neurotrophic factor-0.05520.1199
40544_g_atASCL1 achaete-scute complex-like 1 (Drosophila)-0.05430.118
39634_atSLIT2 slit homolog 2 (Drosophila)-0.05350.1163
36275_atSEMA6A sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A-0.05320.1156
37251_s_atGPM6B glycoprotein M6B-0.05110.1111
32749_s_atFLNA filamin A, alpha (actin binding protein 280)0.0508-0.1104
32093_atCHD5 chromodomain helicase DNA binding protein 5-0.050.1086
2088_s_atEPHB2 EphB20.0487-0.1059
38651_atFEZ2 fasciculation and elongation protein zeta 2 (zygin II)0.0465-0.1011
36699_atDSCAM Down syndrome cell adhesion molecule-0.04620.1003
188_atEFNB1 ephrin-B1-0.04450.0966
867_s_atTHBS1 thrombospondin 10.0441-0.0958
551_atEP300 E1A binding protein p300-0.04080.0886
1148_s_atNRG1 neuregulin 1-0.04040.0878
34306_atMBNL1 muscleblind-like (Drosophila)0.0379-0.0824
38271_atHDAC4 histone deacetylase 4-0.03780.082
41300_s_atITM2B integral membrane protein 2B-0.03760.0816
36836_atNRP1 neuropilin 10.0367-0.0797
39474_s_atCKTSF1B1 cysteine knot superfamily 1, BMP antagonist 10.0347-0.0753
32366_atCNTFR ciliary neurotrophic factor receptor0.0344-0.0748
35800_atPAFAH1B3 platelet-activating factor acetylhydrolase, isoform Ib, gamma subunit 29kDa0.033-0.0716
41678_atEPHB2 EphB20.0329-0.0713
35946_atNELL1 NEL-like 1 (chicken)-0.03050.0662
1059_atNTRK3 neurotrophic tyrosine kinase, receptor, type 3-0.0280.0608
39966_atCSPG5 chondroitin sulfate proteoglycan 5 (neuroglycan C)-0.02690.0584
40856_atSERPINF1 serine (or cysteine) proteinase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 10.0257-0.0558
1015_s_atLIMK1 LIM domain kinase 10.0246-0.0534
40405_atNAB2 NGFI-A binding protein 2 (EGR1 binding protein 2)0.0245-0.0532
35164_atWFS1 Wolfram syndrome 1 (wolframin)-0.0240.0522
41304_atNRP2 neuropilin 20.022-0.0477
1512_atDYRK1A dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A-0.01980.0431
36946_atDYRK1A dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A-0.01860.0404
39598_atGJB1 gap junction protein, beta 1, 32kDa (connexin 32, Charcot-Marie-Tooth neuropathy, X-linked)0.0178-0.0387
34551_atPOU4F2 POU domain, class 4, transcription factor 2-0.01490.0324
36174_atMLP MARCKS-like protein0.0149-0.0324
33461_atSEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A0.0125-0.0271
35204_atSEMA5A sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A-0.01220.0264
36073_atNDN necdin homolog (mouse)-0.01050.0227
39721_atEFNB1 ephrin-B1-0.00920.0199
649_s_atCXCR4 chemokine (C-X-C motif) receptor 40.0087-0.0189
37092_atPCDHAC1 protocadherin alpha subfamily C, 1-0.00820.0177
39590_atAPBA2 amyloid beta (A4) precursor protein-binding, family A, member 2 (X11-like)0.0072-0.0157
34547_atTNRC4 trinucleotide repeat containing 4-0.0070.0151
38083_atNOTCH2 Notch homolog 2 (Drosophila)0.0056-0.0122
1060_g_atNTRK3 neurotrophic tyrosine kinase, receptor, type 3-0.00440.0095
32750_r_atFLNA filamin A, alpha (actin binding protein 280)0.0042-0.0091
40400_atADORA1 adenosine A1 receptor0.0039-0.0085
902_atEPHB2 EphB20.0033-0.0071
31396_r_atMSI1 musashi homolog 1 (Drosophila)0.0018-0.004
32944_atROBO1 roundabout, axon guidance receptor, homolog 1 (Drosophila)-0.00160.0035
35555_r_atZIC2 Zic family member 2 (odd-paired homolog, Drosophila)0.0015-0.0033
37027_atAHNAK AHNAK nucleoprotein (desmoyokin)-0.0010.0022
41582_atAVIL advillin8e-04-0.0018
1088_atBDNF brain-derived neurotrophic factor-8e-040.0017
41660_atCELSR1 cadherin, EGF LAG seven-pass G-type receptor 1 (flamingo homolog, Drosophila)4e-04-9e-04
39502_atDPYSL4 dihydropyrimidinase-like 41e-04-2e-04

Performance on training data

 SensitivitySpecificity
ADENO0.992810.82812
other0.828120.99281

Performance on test data

 SensitivitySpecificity
ADENO0.992810.82812
other0.828120.99281

Predictions

 ClassADENOotherPredictionn
CL2001031606AA (testset)other0.971550.02845 ADENO
CL2001031607AA (testset)other0.393880.60612 other
CL2001031608AA (testset)ADENO0.988190.01181 ADENO
CL2001031609AA (testset)other01 other
CL2001031611AA (testset)ADENO0.993020.00698 ADENO
CL2001031612AA (testset)ADENO0.989540.01046 ADENO
CL2001031613AA (testset)ADENO0.991610.00839 ADENO
CL2001031615AA (testset)ADENO0.993650.00635 ADENO
CL2001031616AA (testset)ADENO0.99180.0082 ADENO
CL2001031618AA (testset)ADENO0.995480.00452 ADENO
CL2001031620AA (testset)other0.009090.99091 other
CL2001031621AA (testset)other0.021090.97891 other
CL2001031622AA (testset)ADENO0.856860.14314 ADENO
CL2001031625AA (testset)ADENO0.997420.00258 ADENO
CL2001031627AA (testset)ADENO0.995030.00497 ADENO
CL2001031628AA (testset)ADENO0.999840.00016 ADENO
CL2001031629AA (testset)ADENO0.981910.01809 ADENO
CL2001031630AA (testset)ADENO0.999690.00031 ADENO
CL2001031631AA (testset)ADENO0.998360.00164 ADENO
CL2001031632AA (testset)ADENO0.964880.03512 ADENO
CL2001031634AA (testset)ADENO0.99880.0012 ADENO
CL2001031635AA (testset)ADENO0.999890.00011 ADENO
CL2001031636AA (testset)ADENO0.999860.00014 ADENO
CL2001032002AA (testset)ADENO0.999060.00094 ADENO
CL2001032005AA (testset)ADENO0.915440.08456 ADENO
CL2001032008AA (testset)ADENO10 ADENO
CL2001032009AA (testset)ADENO10 ADENO
CL2001032010AA (testset)other0.815450.18455 ADENO
CL2001032011AA (testset)ADENO0.991130.00887 ADENO
CL2001032012AA (testset)ADENO0.998180.00182 ADENO
CL2001032013AA (testset)ADENO0.997890.00211 ADENO
CL2001032015AA (testset)ADENO0.736690.26331 ADENO
CL2001032016AA (testset)ADENO0.999740.00026 ADENO
CL2001032019AA (testset)ADENO0.999937e-05 ADENO
CL2001032020AA (testset)ADENO0.999570.00043 ADENO
CL2001032025AA (testset)ADENO0.971210.02879 ADENO
CL2001032026AA (testset)ADENO0.999050.00095 ADENO
CL2001032027AA (testset)ADENO0.999640.00036 ADENO
CL2001032030AA (testset)ADENO0.998990.00101 ADENO
CL2001032031AA (testset)ADENO0.968140.03186 ADENO
CL2001032032AA (testset)ADENO0.864960.13504 ADENO
CL2001032034AA (testset)ADENO0.528930.47107 ADENO
CL2001032036AA (testset)ADENO0.783680.21632 ADENO
CL2001032041AA (testset)other0.005930.99407 other
CL2001032043AA (testset)other0.001590.99841 other
CL2001032044AA (testset)other01 other
CL2001032045AA (testset)other0.015230.98477 other
CL2001032046AA (testset)other0.05180.9482 other
CL2001032101AA (testset)other01 other
CL2001032102AA (testset)other0.021550.97845 other
CL2001032103AA (testset)ADENO0.998680.00132 ADENO
CL2001032104AA (testset)ADENO0.996220.00378 ADENO
CL2001032105AA (testset)ADENO0.999830.00017 ADENO
CL2001032107AA (testset)ADENO0.999520.00048 ADENO
CL2001032108AA (testset)ADENO0.996120.00388 ADENO
CL2001032109AA (testset)ADENO0.702510.29749 ADENO
CL2001032110AA (testset)ADENO0.997930.00207 ADENO
CL2001032111AA (testset)ADENO0.983520.01648 ADENO
CL2001032113AA (testset)ADENO0.773080.22692 ADENO
CL2001032114AA (testset)ADENO0.998680.00132 ADENO
CL2001032115AA (testset)ADENO0.998210.00179 ADENO
CL2001032116AA (testset)ADENO0.999330.00067 ADENO
CL2001032117AA (testset)ADENO0.995680.00432 ADENO
CL2001032121AA (testset)other0.007190.99281 other
CL2001032122AA (testset)other0.97840.0216 ADENO
CL2001032124AA (testset)other01 other
CL2001032125AA (testset)ADENO0.983860.01614 ADENO
CL2001032127AA (testset)other7e-050.99993 other
CL2001032128AA (testset)other0.061070.93893 other
CL2001032129AA (testset)other0.000370.99963 other
CL2001032130AA (testset)ADENO0.998090.00191 ADENO
CL2001032132AA (testset)ADENO0.999170.00083 ADENO
CL2001032134AA (testset)ADENO0.970310.02969 ADENO
CL2001032135AA (testset)ADENO0.995640.00436 ADENO
CL2001032136AA (testset)ADENO0.975970.02403 ADENO
CL2001032138AA (testset)ADENO0.999830.00017 ADENO
CL2001032141AA (testset)ADENO0.977530.02247 ADENO
CL2001032142AA (testset)ADENO0.922440.07756 ADENO
CL2001032144AA (testset)other0.128080.87192 other
CL2001032145AA (testset)other0.000120.99988 other
CL2001032147AA (testset)other0.023850.97615 other
CL2001032149AA (testset)ADENO0.990250.00975 ADENO
CL2001032151AA (testset)other01 other
CL2001032152AA (testset)other0.000660.99934 other
CL2001032153AA (testset)other0.014170.98583 other
CL2001032155AA (testset)ADENO0.912540.08746 ADENO
CL2001032156AA (testset)ADENO0.855440.14456 ADENO
CL2001032202AA (testset)other0.012780.98722 other
CL2001032206AA (testset)other0.094340.90566 other
CL2001032207AA (testset)other0.047250.95275 other
CL2001032209AA (testset)other4e-050.99996 other
CL2001032210AA (testset)other01 other
CL2001032211AA (testset)ADENO0.999810.00019 ADENO
CL2001032212AA (testset)ADENO0.999220.00078 ADENO
CL2001032213AA (testset)ADENO0.681440.31856 ADENO
CL2001032214AA (testset)ADENO0.947480.05252 ADENO
CL2001032217AA (testset)other0.002530.99747 other
CL2001032218AA (testset)other0.070260.92974 other
CL2001032219AA (testset)other01 other
CL2001032220AA (testset)other0.045030.95497 other
CL2001032222AA (testset)other0.520440.47956 ADENO
CL2001032229AA (testset)ADENO0.995820.00418 ADENO
CL2001032231AA (testset)other0.550090.44991 ADENO
CL2001032232AA (testset)ADENO0.999560.00044 ADENO
CL2001032233AA (testset)ADENO0.999670.00033 ADENO
CL2001032238AA (testset)other0.011310.98869 other
CL2001032239AA (testset)other0.038240.96176 other
CL2001032240AA (testset)other0.640570.35943 ADENO
CL2001032241AA (testset)ADENO0.998820.00118 ADENO
CL2001032242AA (testset)ADENO0.999982e-05 ADENO
CL2001032243AA (testset)ADENO0.996510.00349 ADENO
CL2001032248AA (testset)ADENO0.999991e-05 ADENO
CL2001032249AA (testset)ADENO0.999850.00015 ADENO
CL2001032252AA (testset)ADENO0.999850.00015 ADENO
CL2001032254AA (testset)ADENO0.999690.00031 ADENO
CL2001032255AA (testset)ADENO0.999560.00044 ADENO
CL2001032256AA (testset)other0.98970.0103 ADENO
CL2001032259AA (testset)ADENO0.996730.00327 ADENO
CL2001032260AA (testset)other0.000330.99967 other
CL2001032301AA (testset)ADENO0.956350.04365 ADENO
CL2001032304AA (testset)other0.153530.84647 other
CL2001032305AA (testset)other0.976180.02382 ADENO
CL2001032306AA (testset)ADENO0.921530.07847 ADENO
CL2001032307AA (testset)ADENO0.952570.04743 ADENO
CL2001032308AA (testset)ADENO0.991120.00888 ADENO
CL2001032309AA (testset)ADENO0.998880.00112 ADENO
CL2001032310AA (testset)ADENO0.999973e-05 ADENO
CL2001032311AA (testset)ADENO0.997530.00247 ADENO
CL2001032312AA (testset)ADENO0.99982e-04 ADENO
CL2001032313AA (testset)ADENO0.98060.0194 ADENO
CL2001032314AA (testset)ADENO0.999880.00012 ADENO
CL2001032316AA (testset)ADENO0.999860.00014 ADENO
CL2001032601AA (testset)ADENO0.999870.00013 ADENO
CL2001032602AA (testset)ADENO0.999880.00012 ADENO
CL2001032604AA (testset)ADENO0.999570.00043 ADENO
CL2001032607AA (testset)other01 other
CL2001032608AA (testset)other0.000290.99971 other
CL2001032610AA (testset)ADENO0.998580.00142 ADENO
CL2001032612AA (testset)ADENO0.985080.01492 ADENO
CL2001032613AA (testset)ADENO0.989390.01061 ADENO
CL2001032614AA (testset)ADENO0.999390.00061 ADENO
CL2001032616AA (testset)ADENO0.999350.00065 ADENO
CL2001032617AA (testset)ADENO0.998220.00178 ADENO
CL2001032620AA (testset)ADENO0.996870.00313 ADENO
CL2001032625AA (testset)ADENO0.974830.02517 ADENO
CL2001032627AA (testset)other0.000880.99912 other
CL2001032628AA (testset)ADENO0.999520.00048 ADENO
CL2001032629AA (testset)other01 other
CL2001032630AA (testset)other5e-050.99995 other
CL2001032632AA (testset)other0.231860.76814 other
CL2001032638AA (testset)ADENO0.997930.00207 ADENO
CL2001032640AA (testset)ADENO0.999955e-05 ADENO
CL2001032643AA (testset)ADENO0.995510.00449 ADENO
CL2001032644AA (testset)other0.352920.64708 other
CL2001032647AA (testset)ADENO0.997640.00236 ADENO
CL2001032701AA (testset)ADENO0.999890.00011 ADENO
CL2001032702AA (testset)ADENO0.99982e-04 ADENO
CL2001032703AA (testset)ADENO0.999380.00062 ADENO
CL2001032704AA (testset)ADENO0.999420.00058 ADENO
CL2001032706AA (testset)ADENO0.999730.00027 ADENO
CL2001032709AA (testset)ADENO0.999640.00036 ADENO
CL2001032716AA (testset)ADENO0.995460.00454 ADENO
CL2001032717AA (testset)ADENO0.998880.00112 ADENO
CL2001032718AA (testset)other0.000340.99966 other
CL2001032719AA (testset)other0.576450.42355 ADENO
CL2001032720AA (testset)other0.014650.98535 other
CL2001032722AA (testset)other01 other
CL2001032724AA (testset)other0.672060.32794 ADENO
CL2001032725AA (testset)other0.078920.92108 other
CL2001032727AA (testset)other0.066560.93344 other
CL2001032729AA (testset)ADENO0.99991e-04 ADENO
CL2001032730AA (testset)ADENO0.999180.00082 ADENO
CL2001032732AA (testset)other0.522550.47745 ADENO
CL2001032733AA (testset)ADENO0.99430.0057 ADENO
CL2001032738AA (testset)ADENO0.999973e-05 ADENO
CL2001032742AA (testset)ADENO0.998980.00102 ADENO
CL2001032746AA (testset)ADENO0.99919e-04 ADENO
CL2001032747AA (testset)ADENO0.994350.00565 ADENO
CL2001032833AA (testset)ADENO0.998440.00156 ADENO
CL2001032836AA (testset)ADENO0.999880.00012 ADENO
CL2001032838AA (testset)ADENO0.999890.00011 ADENO
CL2001032839AA (testset)ADENO0.584240.41576 ADENO
CL2001032841AA (testset)ADENO0.999919e-05 ADENO
CL2001032842AA (testset)ADENO0.987650.01235 ADENO
CL2001032843AA (testset)ADENO0.999928e-05 ADENO
CL2001032845AA (testset)ADENO0.999610.00039 ADENO
CL2001032846AA (testset)ADENO0.999991e-05 ADENO
CL2001032847AA (testset)other01 other
CL2001032848AA (testset)ADENO0.007360.99264 other
CL2001032850AA (testset)other01 other
CL2001032853AA (testset)other0.0190.981 other
CL2001032854AA (testset)other0.000890.99911 other
CL2001032856AA (testset)ADENO0.997440.00256 ADENO
CL2001032857AA (testset)ADENO0.995520.00448 ADENO
CL2001032860AA (testset)other01 other
CL2001040305AA (testset)ADENO0.996110.00389 ADENO
CL2001040306AA (testset)ADENO0.999250.00075 ADENO
CL2001041708AA (testset)ADENO0.999790.00021 ADENO
CL2001041711AA (testset)ADENO0.987990.01201 ADENO
CL2001041716AA (testset)ADENO0.985460.01454 ADENO
CL2001042501AA (testset)other01 other
CL2001042505AA (testset)ADENO0.996670.00333 ADENO
CL2001042506AA (testset)ADENO0.992530.00747 ADENO

 


Generated by StAM on Tue Sep 7 18:09:32 2004