GO:0007275


GO:0007275

development
(annotated genes)

Biological
Process

Parent node

This leaf node contains 397 genes

The following 98 of these are used in classification:

 SymbolGenenameADENO scoreother score
41338_atAES amino-terminal enhancer of split-0.27490.5971
35414_s_atJAG1 jagged 1 (Alagille syndrome)-0.24930.5415
41337_atAES amino-terminal enhancer of split-0.20920.4544
33178_atJAG1 jagged 1 (Alagille syndrome)-0.20030.435
32648_atDLK1 delta-like 1 homolog (Drosophila)-0.18490.4015
32184_atLMO2 LIM domain only 2 (rhombotin-like 1)-0.17050.3703
1897_atTGFBR3 transforming growth factor, beta receptor III (betaglycan, 300kDa)-0.1430.3106
943_atRUNX1 runt-related transcription factor 1 (acute myeloid leukemia 1; aml1 oncogene)0.1299-0.2822
36499_atCELSR2 cadherin, EGF LAG seven-pass G-type receptor 2 (flamingo homolog, Drosophila)-0.12820.2784
469_atEFNB3 ephrin-B3-0.12650.2747
1693_s_atTIMP1 tissue inhibitor of metalloproteinase 1 (erythroid potentiating activity, collagenase inhibitor)0.1216-0.2641
37912_atTRAF4 TNF receptor-associated factor 40.1164-0.2528
33169_atNEO1 neogenin homolog 1 (chicken)-0.10440.2268
1984_s_atARHGDIB Rho GDP dissociation inhibitor (GDI) beta0.0994-0.216
36336_s_atGPX4 glutathione peroxidase 4 (phospholipid hydroperoxidase)0.0992-0.2153
2091_atWNT4 wingless-type MMTV integration site family, member 4-0.09220.2003
39421_atRUNX1 runt-related transcription factor 1 (acute myeloid leukemia 1; aml1 oncogene)0.0913-0.1984
36061_atSEMA5A sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A-0.09010.1956
34782_atJARID2 Jumonji, AT rich interactive domain 2-0.08240.1789
40395_atPLXNA2 plexin A2-0.07810.1696
38551_atL1CAM L1 cell adhesion molecule (hydrocephalus, stenosis of aqueduct of Sylvius 1, MASA (mental retardation, aphasia, shuffling gait and adducted thumbs) syndrome, spastic paraplegia 1)-0.07690.1671
39061_atBST2 bone marrow stromal cell antigen 20.076-0.165
38132_atCDC42EP1 CDC42 effector protein (Rho GTPase binding) 10.0707-0.1535
39990_atISL1 ISL1 transcription factor, LIM/homeodomain, (islet-1)-0.06830.1482
41087_atDLX5 distal-less homeo box 5-0.06810.148
38111_atCSPG2 chondroitin sulfate proteoglycan 2 (versican)0.0639-0.1388
38855_s_atOLFM1 olfactomedin 1-0.06390.1388
37633_s_atPAEP progestagen-associated endometrial protein (placental protein 14, pregnancy-associated endometrial alpha-2-globulin, alpha uterine protein)0.0638-0.1385
31682_s_atCSPG2 chondroitin sulfate proteoglycan 2 (versican)0.0614-0.1334
36799_atFZD2 frizzled homolog 2 (Drosophila)0.0607-0.1319
36134_atOLFM1 olfactomedin 1-0.05960.1295
39542_atENC1 ectodermal-neural cortex (with BTB-like domain)0.052-0.1129
33929_atGPC1 glypican 1-0.0490.1064
34626_atHIC1 hypermethylated in cancer 10.0486-0.1056
33133_atFLII flightless I homolog (Drosophila)0.0469-0.1018
38112_g_atCSPG2 chondroitin sulfate proteoglycan 2 (versican)0.0467-0.1014
33348_atTCF12 transcription factor 12 (HTF4, helix-loop-helix transcription factors 4)-0.04630.1006
40199_atMSX1 msh homeo box homolog 1 (Drosophila)-0.04440.0965
33783_atPLXNB1 plexin B1-0.04250.0922
38671_atPLXND1 plexin D10.0412-0.0894
37918_atITGB2 integrin, beta 2 (antigen CD18 (p95), lymphocyte function-associated antigen 1; macrophage antigen 1 (mac-1) beta subunit)0.0405-0.088
40873_atDVL3 dishevelled, dsh homolog 3 (Drosophila)-0.03960.0861
39051_atNNAT neuronatin-0.03950.0858
1881_atRUNX1 runt-related transcription factor 1 (acute myeloid leukemia 1; aml1 oncogene)0.0373-0.081
39638_atTFAP4 transcription factor AP-4 (activating enhancer binding protein 4)-0.03560.0773
39833_atMINK misshapen/NIK-related kinase-0.03370.0731
40312_atDACH dachshund homolog (Drosophila)-0.03240.0704
41705_atRFNG radical fringe homolog (Drosophila)0.032-0.0695
1579_atOSM oncostatin M0.0315-0.0685
32521_atSFRP1 secreted frizzled-related protein 1-0.03140.0683
115_atTHBS1 thrombospondin 10.0299-0.0649
36065_atLDB2 LIM domain binding 2-0.02990.0649
35939_s_atPOU4F1 POU domain, class 4, transcription factor 1-0.02940.0638
31843_atESRRG estrogen-related receptor gamma-0.02930.0637
38356_atFST follistatin-0.0280.0608
36275_atSEMA6A sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A-0.02790.0605
40127_atPRRX1 paired related homeobox 10.0274-0.0594
2090_i_atWNT6 wingless-type MMTV integration site family, member 60.0263-0.0571
40392_atCDX2 caudal type homeo box transcription factor 20.026-0.0564
34819_atCD164 CD164 antigen, sialomucin-0.02510.0545
33130_atHOXD1 homeo box D10.025-0.0543
33319_atAXIN1 axin 10.0224-0.0487
376_atSEMA3C sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C0.022-0.0479
1882_g_atRUNX1 runt-related transcription factor 1 (acute myeloid leukemia 1; aml1 oncogene)0.0211-0.0458
32535_atFBN1 fibrillin 1 (Marfan syndrome)0.0207-0.045
37530_s_atRELN reelin-0.02010.0437
40020_atCELSR3 cadherin, EGF LAG seven-pass G-type receptor 3 (flamingo homolog, Drosophila)-0.020.0434
188_atEFNB1 ephrin-B1-0.01910.0415
867_s_atTHBS1 thrombospondin 10.0188-0.0407
39406_atBMP1 bone morphogenetic protein 10.0184-0.0399
41215_s_atID2 inhibitor of DNA binding 2, dominant negative helix-loop-helix protein-0.01780.0387
37248_atCPZ carboxypeptidase Z0.0154-0.0334
37634_atPAEP progestagen-associated endometrial protein (placental protein 14, pregnancy-associated endometrial alpha-2-globulin, alpha uterine protein)0.0151-0.0329
36422_s_atCHRD chordin0.0125-0.0272
33045_r_atEMX1 empty spiracles homolog 1 (Drosophila)0.0125-0.0272
38271_atHDAC4 histone deacetylase 4-0.01240.027
40004_atSIX1 sine oculis homeobox homolog 1 (Drosophila)-0.01130.0245
31908_atLFNG lunatic fringe homolog (Drosophila)0.0111-0.024
169_atCDX1 caudal type homeo box transcription factor 10.0106-0.0231
393_s_atRUNX1 runt-related transcription factor 1 (acute myeloid leukemia 1; aml1 oncogene)0.0098-0.0213
31609_s_atPCOLCE procollagen C-endopeptidase enhancer0.0097-0.0212
1400_atCSF2 colony stimulating factor 2 (granulocyte-macrophage)0.0095-0.0207
39474_s_atCKTSF1B1 cysteine knot superfamily 1, BMP antagonist 10.0093-0.0202
163_atDVL1 dishevelled, dsh homolog 1 (Drosophila)0.0089-0.0194
41201_atDNM1L dynamin 1-like-0.00870.0189
33137_atLTBP4 latent transforming growth factor beta binding protein 4-0.00840.0182
38589_i_atPTMA prothymosin, alpha (gene sequence 28)0.0081-0.0175
38831_f_atEPO erythropoietin-0.00720.0156
37663_atDDX1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 1-0.00630.0137
377_g_atSEMA3C sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C0.0041-0.009
39610_atHOXB2 homeo box B2-0.00390.0084
1572_s_atINSR insulin receptor-0.00370.0079
170_atCDX2 caudal type homeo box transcription factor 20.0023-0.005
34148_atSIX3 sine oculis homeobox homolog 3 (Drosophila)-9e-040.002
41014_s_atPITX2 paired-like homeodomain transcription factor 26e-04-0.0013
33606_g_atNKX2-2 NK2 transcription factor related, locus 2 (Drosophila)-4e-040.001
40856_atSERPINF1 serine (or cysteine) proteinase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 13e-04-7e-04
34165_atNKX2-8 NK2 transcription factor related, locus 8 (Drosophila)2e-04-4e-04

Performance on training data

 SensitivitySpecificity
ADENO0.985610.84375
other0.843750.98561

Performance on test data

 SensitivitySpecificity
ADENO0.985610.84375
other0.843750.98561

Predictions

 ClassADENOotherPredictionn
CL2001031606AA (testset)other0.803780.19622 ADENO
CL2001031607AA (testset)other0.225750.77425 other
CL2001031608AA (testset)ADENO0.970080.02992 ADENO
CL2001031609AA (testset)other01 other
CL2001031611AA (testset)ADENO0.998140.00186 ADENO
CL2001031612AA (testset)ADENO0.85690.1431 ADENO
CL2001031613AA (testset)ADENO0.978710.02129 ADENO
CL2001031615AA (testset)ADENO0.994770.00523 ADENO
CL2001031616AA (testset)ADENO0.995230.00477 ADENO
CL2001031618AA (testset)ADENO0.992620.00738 ADENO
CL2001031620AA (testset)other0.021250.97875 other
CL2001031621AA (testset)other0.673750.32625 ADENO
CL2001031622AA (testset)ADENO0.937070.06293 ADENO
CL2001031625AA (testset)ADENO0.977970.02203 ADENO
CL2001031627AA (testset)ADENO0.992340.00766 ADENO
CL2001031628AA (testset)ADENO0.999964e-05 ADENO
CL2001031629AA (testset)ADENO0.951060.04894 ADENO
CL2001031630AA (testset)ADENO0.999260.00074 ADENO
CL2001031631AA (testset)ADENO0.99210.0079 ADENO
CL2001031632AA (testset)ADENO0.992510.00749 ADENO
CL2001031634AA (testset)ADENO0.970710.02929 ADENO
CL2001031635AA (testset)ADENO0.999760.00024 ADENO
CL2001031636AA (testset)ADENO0.993490.00651 ADENO
CL2001032002AA (testset)ADENO0.992440.00756 ADENO
CL2001032005AA (testset)ADENO0.763910.23609 ADENO
CL2001032008AA (testset)ADENO0.995610.00439 ADENO
CL2001032009AA (testset)ADENO0.998560.00144 ADENO
CL2001032010AA (testset)other0.945490.05451 ADENO
CL2001032011AA (testset)ADENO0.996730.00327 ADENO
CL2001032012AA (testset)ADENO0.982760.01724 ADENO
CL2001032013AA (testset)ADENO0.998910.00109 ADENO
CL2001032015AA (testset)ADENO0.967530.03247 ADENO
CL2001032016AA (testset)ADENO0.996870.00313 ADENO
CL2001032019AA (testset)ADENO0.99991e-04 ADENO
CL2001032020AA (testset)ADENO0.999670.00033 ADENO
CL2001032025AA (testset)ADENO0.999310.00069 ADENO
CL2001032026AA (testset)ADENO0.98750.0125 ADENO
CL2001032027AA (testset)ADENO0.991060.00894 ADENO
CL2001032030AA (testset)ADENO0.986860.01314 ADENO
CL2001032031AA (testset)ADENO0.981290.01871 ADENO
CL2001032032AA (testset)ADENO0.944080.05592 ADENO
CL2001032034AA (testset)ADENO0.373260.62674 other
CL2001032036AA (testset)ADENO0.854890.14511 ADENO
CL2001032041AA (testset)other0.355220.64478 other
CL2001032043AA (testset)other0.014910.98509 other
CL2001032044AA (testset)other01 other
CL2001032045AA (testset)other0.162380.83762 other
CL2001032046AA (testset)other0.143670.85633 other
CL2001032101AA (testset)other4e-050.99996 other
CL2001032102AA (testset)other0.416390.58361 other
CL2001032103AA (testset)ADENO0.99870.0013 ADENO
CL2001032104AA (testset)ADENO0.99670.0033 ADENO
CL2001032105AA (testset)ADENO0.988290.01171 ADENO
CL2001032107AA (testset)ADENO0.998510.00149 ADENO
CL2001032108AA (testset)ADENO0.995930.00407 ADENO
CL2001032109AA (testset)ADENO0.645760.35424 ADENO
CL2001032110AA (testset)ADENO0.998980.00102 ADENO
CL2001032111AA (testset)ADENO0.936180.06382 ADENO
CL2001032113AA (testset)ADENO0.808940.19106 ADENO
CL2001032114AA (testset)ADENO0.999250.00075 ADENO
CL2001032115AA (testset)ADENO0.996410.00359 ADENO
CL2001032116AA (testset)ADENO0.997340.00266 ADENO
CL2001032117AA (testset)ADENO0.996910.00309 ADENO
CL2001032121AA (testset)other0.037710.96229 other
CL2001032122AA (testset)other0.389340.61066 other
CL2001032124AA (testset)other01 other
CL2001032125AA (testset)ADENO0.984940.01506 ADENO
CL2001032127AA (testset)other1e-050.99999 other
CL2001032128AA (testset)other0.153990.84601 other
CL2001032129AA (testset)other0.155780.84422 other
CL2001032130AA (testset)ADENO0.999610.00039 ADENO
CL2001032132AA (testset)ADENO0.980580.01942 ADENO
CL2001032134AA (testset)ADENO0.946350.05365 ADENO
CL2001032135AA (testset)ADENO0.985410.01459 ADENO
CL2001032136AA (testset)ADENO0.988730.01127 ADENO
CL2001032138AA (testset)ADENO0.998630.00137 ADENO
CL2001032141AA (testset)ADENO0.996860.00314 ADENO
CL2001032142AA (testset)ADENO0.679280.32072 ADENO
CL2001032144AA (testset)other0.066380.93362 other
CL2001032145AA (testset)other0.001850.99815 other
CL2001032147AA (testset)other0.204920.79508 other
CL2001032149AA (testset)ADENO0.998660.00134 ADENO
CL2001032151AA (testset)other01 other
CL2001032152AA (testset)other0.002790.99721 other
CL2001032153AA (testset)other0.103910.89609 other
CL2001032155AA (testset)ADENO0.7040.296 ADENO
CL2001032156AA (testset)ADENO0.610190.38981 ADENO
CL2001032202AA (testset)other0.027270.97273 other
CL2001032206AA (testset)other0.689370.31063 ADENO
CL2001032207AA (testset)other0.301590.69841 other
CL2001032209AA (testset)other0.001710.99829 other
CL2001032210AA (testset)other01 other
CL2001032211AA (testset)ADENO0.975530.02447 ADENO
CL2001032212AA (testset)ADENO0.949660.05034 ADENO
CL2001032213AA (testset)ADENO0.990460.00954 ADENO
CL2001032214AA (testset)ADENO0.895240.10476 ADENO
CL2001032217AA (testset)other0.004140.99586 other
CL2001032218AA (testset)other0.008640.99136 other
CL2001032219AA (testset)other01 other
CL2001032220AA (testset)other0.128030.87197 other
CL2001032222AA (testset)other0.228750.77125 other
CL2001032229AA (testset)ADENO0.996320.00368 ADENO
CL2001032231AA (testset)other0.491030.50897 other
CL2001032232AA (testset)ADENO0.999810.00019 ADENO
CL2001032233AA (testset)ADENO0.999890.00011 ADENO
CL2001032238AA (testset)other0.007810.99219 other
CL2001032239AA (testset)other0.010930.98907 other
CL2001032240AA (testset)other0.461380.53862 other
CL2001032241AA (testset)ADENO0.999450.00055 ADENO
CL2001032242AA (testset)ADENO0.999870.00013 ADENO
CL2001032243AA (testset)ADENO0.994040.00596 ADENO
CL2001032248AA (testset)ADENO0.955920.04408 ADENO
CL2001032249AA (testset)ADENO0.999180.00082 ADENO
CL2001032252AA (testset)ADENO0.890010.10999 ADENO
CL2001032254AA (testset)ADENO0.999919e-05 ADENO
CL2001032255AA (testset)ADENO0.999010.00099 ADENO
CL2001032256AA (testset)other0.943420.05658 ADENO
CL2001032259AA (testset)ADENO0.934020.06598 ADENO
CL2001032260AA (testset)other0.031190.96881 other
CL2001032301AA (testset)ADENO0.904490.09551 ADENO
CL2001032304AA (testset)other0.920460.07954 ADENO
CL2001032305AA (testset)other0.856590.14341 ADENO
CL2001032306AA (testset)ADENO0.99370.0063 ADENO
CL2001032307AA (testset)ADENO0.646850.35315 ADENO
CL2001032308AA (testset)ADENO0.96080.0392 ADENO
CL2001032309AA (testset)ADENO0.990930.00907 ADENO
CL2001032310AA (testset)ADENO0.982710.01729 ADENO
CL2001032311AA (testset)ADENO0.948590.05141 ADENO
CL2001032312AA (testset)ADENO0.999150.00085 ADENO
CL2001032313AA (testset)ADENO0.999340.00066 ADENO
CL2001032314AA (testset)ADENO0.996460.00354 ADENO
CL2001032316AA (testset)ADENO0.998760.00124 ADENO
CL2001032601AA (testset)ADENO0.99928e-04 ADENO
CL2001032602AA (testset)ADENO0.976640.02336 ADENO
CL2001032604AA (testset)ADENO0.99050.0095 ADENO
CL2001032607AA (testset)other1e-050.99999 other
CL2001032608AA (testset)other0.027290.97271 other
CL2001032610AA (testset)ADENO0.984490.01551 ADENO
CL2001032612AA (testset)ADENO0.984430.01557 ADENO
CL2001032613AA (testset)ADENO0.998120.00188 ADENO
CL2001032614AA (testset)ADENO0.994820.00518 ADENO
CL2001032616AA (testset)ADENO0.97580.0242 ADENO
CL2001032617AA (testset)ADENO0.96160.0384 ADENO
CL2001032620AA (testset)ADENO0.994850.00515 ADENO
CL2001032625AA (testset)ADENO0.985790.01421 ADENO
CL2001032627AA (testset)other0.20460.7954 other
CL2001032628AA (testset)ADENO0.999780.00022 ADENO
CL2001032629AA (testset)other01 other
CL2001032630AA (testset)other4e-050.99996 other
CL2001032632AA (testset)other0.011760.98824 other
CL2001032638AA (testset)ADENO0.95170.0483 ADENO
CL2001032640AA (testset)ADENO0.917370.08263 ADENO
CL2001032643AA (testset)ADENO0.998870.00113 ADENO
CL2001032644AA (testset)other0.246880.75312 other
CL2001032647AA (testset)ADENO0.998870.00113 ADENO
CL2001032701AA (testset)ADENO0.995560.00444 ADENO
CL2001032702AA (testset)ADENO0.995950.00405 ADENO
CL2001032703AA (testset)ADENO0.998980.00102 ADENO
CL2001032704AA (testset)ADENO0.982410.01759 ADENO
CL2001032706AA (testset)ADENO0.9980.002 ADENO
CL2001032709AA (testset)ADENO0.999680.00032 ADENO
CL2001032716AA (testset)ADENO0.850560.14944 ADENO
CL2001032717AA (testset)ADENO0.990690.00931 ADENO
CL2001032718AA (testset)other0.005790.99421 other
CL2001032719AA (testset)other0.865940.13406 ADENO
CL2001032720AA (testset)other1e-050.99999 other
CL2001032722AA (testset)other01 other
CL2001032724AA (testset)other0.770840.22916 ADENO
CL2001032725AA (testset)other0.014380.98562 other
CL2001032727AA (testset)other0.070090.92991 other
CL2001032729AA (testset)ADENO0.991820.00818 ADENO
CL2001032730AA (testset)ADENO0.994650.00535 ADENO
CL2001032732AA (testset)other0.193110.80689 other
CL2001032733AA (testset)ADENO0.996490.00351 ADENO
CL2001032738AA (testset)ADENO0.997290.00271 ADENO
CL2001032742AA (testset)ADENO0.801760.19824 ADENO
CL2001032746AA (testset)ADENO0.9980.002 ADENO
CL2001032747AA (testset)ADENO0.986860.01314 ADENO
CL2001032833AA (testset)ADENO0.999260.00074 ADENO
CL2001032836AA (testset)ADENO0.999470.00053 ADENO
CL2001032838AA (testset)ADENO0.995820.00418 ADENO
CL2001032839AA (testset)ADENO0.952330.04767 ADENO
CL2001032841AA (testset)ADENO0.999810.00019 ADENO
CL2001032842AA (testset)ADENO0.997930.00207 ADENO
CL2001032843AA (testset)ADENO0.995650.00435 ADENO
CL2001032845AA (testset)ADENO0.999260.00074 ADENO
CL2001032846AA (testset)ADENO0.997680.00232 ADENO
CL2001032847AA (testset)other3e-050.99997 other
CL2001032848AA (testset)ADENO0.064750.93525 other
CL2001032850AA (testset)other01 other
CL2001032853AA (testset)other0.51720.4828 ADENO
CL2001032854AA (testset)other0.000420.99958 other
CL2001032856AA (testset)ADENO0.999160.00084 ADENO
CL2001032857AA (testset)ADENO0.996740.00326 ADENO
CL2001032860AA (testset)other01 other
CL2001040305AA (testset)ADENO0.986730.01327 ADENO
CL2001040306AA (testset)ADENO0.983570.01643 ADENO
CL2001041708AA (testset)ADENO0.999480.00052 ADENO
CL2001041711AA (testset)ADENO0.994290.00571 ADENO
CL2001041716AA (testset)ADENO0.992260.00774 ADENO
CL2001042501AA (testset)other3e-050.99997 other
CL2001042505AA (testset)ADENO0.51890.4811 ADENO
CL2001042506AA (testset)ADENO0.987970.01203 ADENO

 


Generated by StAM on Tue Sep 7 18:09:27 2004