GO:0006470


GO:0006470

protein amino acid dephosphorylation
(annotated genes)

Biological
Process

Parent nodes

This leaf node contains 140 genes

The following 68 of these are used in classification:

 SymbolGenenameADENO scoreother score
33218_atERBB2 v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian)0.2869-0.6231
1802_s_atERBB2 v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian)0.2508-0.5448
36160_s_atPTPRN2 protein tyrosine phosphatase, receptor type, N polypeptide 2-0.2130.4625
917_g_atPTPRN protein tyrosine phosphatase, receptor type, N-0.20920.4544
1901_s_atERBB2 v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian)0.1731-0.3759
1562_g_atDUSP8 dual specificity phosphatase 8-0.16070.349
843_atPTP4A1 protein tyrosine phosphatase type IVA, member 10.1494-0.3245
916_atPTPRN protein tyrosine phosphatase, receptor type, N-0.13650.2966
1364_atPTPRZ1 protein tyrosine phosphatase, receptor-type, Z polypeptide 1-0.13190.2865
1150_atPTPRE protein tyrosine phosphatase, receptor type, E0.1174-0.255
32916_atPTPRE protein tyrosine phosphatase, receptor type, E0.1163-0.2526
33413_atPTP4A1 protein tyrosine phosphatase type IVA, member 10.1097-0.2382
32157_atPPP1CA protein phosphatase 1, catalytic subunit, alpha isoform0.106-0.2302
1496_atPTPRA protein tyrosine phosphatase, receptor type, A-0.10510.2284
36808_atPTPN22 protein tyrosine phosphatase, non-receptor type 22 (lymphoid)0.0967-0.2101
37107_atPPM1D protein phosphatase 1D magnesium-dependent, delta isoform-0.08240.1789
924_s_atPPP2CB protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform-0.08190.178
41193_atDUSP6 dual specificity phosphatase 60.0781-0.1696
33750_atPTPRU protein tyrosine phosphatase, receptor type, U0.0778-0.1689
1463_atPTPN12 protein tyrosine phosphatase, non-receptor type 120.0693-0.1505
922_atPPP2R1A protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform-0.06520.1416
38277_atPPP3CB protein phosphatase 3 (formerly 2B), catalytic subunit, beta isoform (calcineurin A beta)-0.06450.1402
39127_f_atPPP2R4 protein phosphatase 2A, regulatory subunit B' (PR 53)-0.06450.14
39227_atPTPRT protein tyrosine phosphatase, receptor type, T-0.05780.1256
36435_atPPM1A protein phosphatase 1A (formerly 2C), magnesium-dependent, alpha isoform-0.05010.1088
39932_atDUSP7 dual specificity phosphatase 7-0.04930.1072
35202_atRNGTT RNA guanylyltransferase and 5'-phosphatase-0.04860.1056
38443_atPTPN11 protein tyrosine phosphatase, non-receptor type 11 (Noonan syndrome 1)-0.04740.103
32141_atPPM1E protein phosphatase 1E (PP2C domain containing)-0.04470.0971
407_atPTPRB protein tyrosine phosphatase, receptor type, B-0.04450.0965
33911_atPTPRD protein tyrosine phosphatase, receptor type, D-0.0430.0935
1788_s_atDUSP4 dual specificity phosphatase 40.0418-0.0909
37384_atPPM1F protein phosphatase 1F (PP2C domain containing)-0.04130.0896
392_g_atPPP5C protein phosphatase 5, catalytic subunit-0.03910.0849
39672_atPTPN7 protein tyrosine phosphatase, non-receptor type 70.0388-0.0843
41429_atPPP2R1B protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), beta isoform-0.03840.0835
529_atDUSP5 dual specificity phosphatase 50.0384-0.0834
39780_atPPP3CB protein phosphatase 3 (formerly 2B), catalytic subunit, beta isoform (calcineurin A beta)-0.0360.0783
33910_atPTPRD protein tyrosine phosphatase, receptor type, D-0.03550.0771
40920_atCDC14B CDC14 cell division cycle 14 homolog B (S. cerevisiae)-0.03420.0742
40519_atPTPRC protein tyrosine phosphatase, receptor type, C0.0316-0.0686
37777_atPTPRB protein tyrosine phosphatase, receptor type, B-0.03150.0683
37581_atPPP6C protein phosphatase 6, catalytic subunit-0.03130.068
40867_atPPP2R1A protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform-0.02890.0627
40518_atPTPRC protein tyrosine phosphatase, receptor type, C0.0282-0.0611
391_atPPP5C protein phosphatase 5, catalytic subunit-0.02740.0596
1094_g_atPPP2R1B protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), beta isoform-0.02660.0578
33453_atPTPN18 protein tyrosine phosphatase, non-receptor type 18 (brain-derived)-0.02650.0576
39128_r_atPPP2R4 protein phosphatase 2A, regulatory subunit B' (PR 53)-0.0250.0544
32665_atPPM1B protein phosphatase 1B (formerly 2C), magnesium-dependent, beta isoform-0.02040.0444
36008_atPTP4A3 protein tyrosine phosphatase type IVA, member 30.0168-0.0364
38035_atMTMR6 myotubularin related protein 6-0.01620.0352
33277_atMTMR2 myotubularin related protein 2-0.01590.0344
38415_atPTP4A2 protein tyrosine phosphatase type IVA, member 20.0157-0.0341
40520_g_atPTPRC protein tyrosine phosphatase, receptor type, C0.0149-0.0323
39835_atSBF1 SET binding factor 10.0147-0.032
1760_s_atPTPN7 protein tyrosine phosphatase, non-receptor type 70.0147-0.0319
237_s_atPPP2CA protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform-0.01160.0252
1561_atDUSP8 dual specificity phosphatase 8-0.00910.0197
1256_atPTPRD protein tyrosine phosphatase, receptor type, D-0.00880.0191
1811_atPTPRH protein tyrosine phosphatase, receptor type, H-0.00580.0126
37893_atPTPN2 protein tyrosine phosphatase, non-receptor type 20.0056-0.0121
34198_atPTPN13 protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)0.0035-0.0077
1005_atDUSP1 dual specificity phosphatase 10.0034-0.0075
1657_atPTPRR protein tyrosine phosphatase, receptor type, R-0.00320.0069
1241_atPTP4A2 protein tyrosine phosphatase type IVA, member 20.0027-0.0059
1247_g_atPTPRS protein tyrosine phosphatase, receptor type, S0.0017-0.0036
34249_atEPM2A epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)-0.00110.0023

Performance on training data

 SensitivitySpecificity
ADENO0.992810.78125
other0.781250.99281

Performance on test data

 SensitivitySpecificity
ADENO0.992810.78125
other0.781250.99281

Predictions

 ClassADENOotherPredictionn
CL2001031606AA (testset)other0.270830.72917 other
CL2001031607AA (testset)other0.422340.57766 other
CL2001031608AA (testset)ADENO0.983780.01622 ADENO
CL2001031609AA (testset)other7e-050.99993 other
CL2001031611AA (testset)ADENO0.992850.00715 ADENO
CL2001031612AA (testset)ADENO0.819670.18033 ADENO
CL2001031613AA (testset)ADENO0.984950.01505 ADENO
CL2001031615AA (testset)ADENO0.92020.0798 ADENO
CL2001031616AA (testset)ADENO0.918470.08153 ADENO
CL2001031618AA (testset)ADENO0.991830.00817 ADENO
CL2001031620AA (testset)other0.635690.36431 ADENO
CL2001031621AA (testset)other0.391080.60892 other
CL2001031622AA (testset)ADENO0.692570.30743 ADENO
CL2001031625AA (testset)ADENO0.992040.00796 ADENO
CL2001031627AA (testset)ADENO0.961890.03811 ADENO
CL2001031628AA (testset)ADENO0.997880.00212 ADENO
CL2001031629AA (testset)ADENO0.968190.03181 ADENO
CL2001031630AA (testset)ADENO0.998760.00124 ADENO
CL2001031631AA (testset)ADENO0.99450.0055 ADENO
CL2001031632AA (testset)ADENO0.886320.11368 ADENO
CL2001031634AA (testset)ADENO0.952560.04744 ADENO
CL2001031635AA (testset)ADENO0.980940.01906 ADENO
CL2001031636AA (testset)ADENO0.815680.18432 ADENO
CL2001032002AA (testset)ADENO0.959940.04006 ADENO
CL2001032005AA (testset)ADENO0.500190.49981 ADENO
CL2001032008AA (testset)ADENO0.921150.07885 ADENO
CL2001032009AA (testset)ADENO0.999480.00052 ADENO
CL2001032010AA (testset)other0.853760.14624 ADENO
CL2001032011AA (testset)ADENO0.97060.0294 ADENO
CL2001032012AA (testset)ADENO0.993910.00609 ADENO
CL2001032013AA (testset)ADENO0.96980.0302 ADENO
CL2001032015AA (testset)ADENO0.732480.26752 ADENO
CL2001032016AA (testset)ADENO0.996380.00362 ADENO
CL2001032019AA (testset)ADENO0.998490.00151 ADENO
CL2001032020AA (testset)ADENO0.996550.00345 ADENO
CL2001032025AA (testset)ADENO0.991530.00847 ADENO
CL2001032026AA (testset)ADENO0.966180.03382 ADENO
CL2001032027AA (testset)ADENO0.996050.00395 ADENO
CL2001032030AA (testset)ADENO0.981360.01864 ADENO
CL2001032031AA (testset)ADENO0.988670.01133 ADENO
CL2001032032AA (testset)ADENO0.973510.02649 ADENO
CL2001032034AA (testset)ADENO0.941780.05822 ADENO
CL2001032036AA (testset)ADENO0.458810.54119 other
CL2001032041AA (testset)other0.402830.59717 other
CL2001032043AA (testset)other0.38420.6158 other
CL2001032044AA (testset)other5e-050.99995 other
CL2001032045AA (testset)other0.451050.54895 other
CL2001032046AA (testset)other0.425190.57481 other
CL2001032101AA (testset)other9e-050.99991 other
CL2001032102AA (testset)other0.812930.18707 ADENO
CL2001032103AA (testset)ADENO0.886160.11384 ADENO
CL2001032104AA (testset)ADENO0.996160.00384 ADENO
CL2001032105AA (testset)ADENO0.967340.03266 ADENO
CL2001032107AA (testset)ADENO0.994560.00544 ADENO
CL2001032108AA (testset)ADENO0.996060.00394 ADENO
CL2001032109AA (testset)ADENO0.845860.15414 ADENO
CL2001032110AA (testset)ADENO0.966470.03353 ADENO
CL2001032111AA (testset)ADENO0.999250.00075 ADENO
CL2001032113AA (testset)ADENO0.86450.1355 ADENO
CL2001032114AA (testset)ADENO0.980310.01969 ADENO
CL2001032115AA (testset)ADENO0.972160.02784 ADENO
CL2001032116AA (testset)ADENO0.994630.00537 ADENO
CL2001032117AA (testset)ADENO0.998240.00176 ADENO
CL2001032121AA (testset)other0.021910.97809 other
CL2001032122AA (testset)other0.600250.39975 ADENO
CL2001032124AA (testset)other0.000360.99964 other
CL2001032125AA (testset)ADENO0.838670.16133 ADENO
CL2001032127AA (testset)other2e-050.99998 other
CL2001032128AA (testset)other0.548340.45166 ADENO
CL2001032129AA (testset)other0.267820.73218 other
CL2001032130AA (testset)ADENO0.970990.02901 ADENO
CL2001032132AA (testset)ADENO0.989740.01026 ADENO
CL2001032134AA (testset)ADENO0.951090.04891 ADENO
CL2001032135AA (testset)ADENO0.99973e-04 ADENO
CL2001032136AA (testset)ADENO0.816480.18352 ADENO
CL2001032138AA (testset)ADENO0.994520.00548 ADENO
CL2001032141AA (testset)ADENO0.994730.00527 ADENO
CL2001032142AA (testset)ADENO0.521270.47873 ADENO
CL2001032144AA (testset)other0.554870.44513 ADENO
CL2001032145AA (testset)other2e-040.9998 other
CL2001032147AA (testset)other0.696010.30399 ADENO
CL2001032149AA (testset)ADENO0.992740.00726 ADENO
CL2001032151AA (testset)other1e-050.99999 other
CL2001032152AA (testset)other5e-050.99995 other
CL2001032153AA (testset)other0.089180.91082 other
CL2001032155AA (testset)ADENO0.94610.0539 ADENO
CL2001032156AA (testset)ADENO0.749920.25008 ADENO
CL2001032202AA (testset)other0.512630.48737 ADENO
CL2001032206AA (testset)other0.55740.4426 ADENO
CL2001032207AA (testset)other0.255540.74446 other
CL2001032209AA (testset)other0.154710.84529 other
CL2001032210AA (testset)other2e-040.9998 other
CL2001032211AA (testset)ADENO0.975230.02477 ADENO
CL2001032212AA (testset)ADENO0.933650.06635 ADENO
CL2001032213AA (testset)ADENO0.515470.48453 ADENO
CL2001032214AA (testset)ADENO0.985520.01448 ADENO
CL2001032217AA (testset)other0.03310.9669 other
CL2001032218AA (testset)other0.151990.84801 other
CL2001032219AA (testset)other5e-050.99995 other
CL2001032220AA (testset)other0.538220.46178 ADENO
CL2001032222AA (testset)other0.936230.06377 ADENO
CL2001032229AA (testset)ADENO0.935620.06438 ADENO
CL2001032231AA (testset)other0.352590.64741 other
CL2001032232AA (testset)ADENO0.999790.00021 ADENO
CL2001032233AA (testset)ADENO0.983750.01625 ADENO
CL2001032238AA (testset)other0.000480.99952 other
CL2001032239AA (testset)other0.227130.77287 other
CL2001032240AA (testset)other0.399830.60017 other
CL2001032241AA (testset)ADENO0.98910.0109 ADENO
CL2001032242AA (testset)ADENO0.989070.01093 ADENO
CL2001032243AA (testset)ADENO0.994120.00588 ADENO
CL2001032248AA (testset)ADENO0.998120.00188 ADENO
CL2001032249AA (testset)ADENO0.99630.0037 ADENO
CL2001032252AA (testset)ADENO0.985150.01485 ADENO
CL2001032254AA (testset)ADENO0.99670.0033 ADENO
CL2001032255AA (testset)ADENO0.986820.01318 ADENO
CL2001032256AA (testset)other0.984170.01583 ADENO
CL2001032259AA (testset)ADENO0.837750.16225 ADENO
CL2001032260AA (testset)other0.012570.98743 other
CL2001032301AA (testset)ADENO0.925330.07467 ADENO
CL2001032304AA (testset)other0.488720.51128 other
CL2001032305AA (testset)other0.414750.58525 other
CL2001032306AA (testset)ADENO0.977360.02264 ADENO
CL2001032307AA (testset)ADENO0.98930.0107 ADENO
CL2001032308AA (testset)ADENO0.847050.15295 ADENO
CL2001032309AA (testset)ADENO0.994950.00505 ADENO
CL2001032310AA (testset)ADENO10 ADENO
CL2001032311AA (testset)ADENO0.992420.00758 ADENO
CL2001032312AA (testset)ADENO0.98920.0108 ADENO
CL2001032313AA (testset)ADENO0.950740.04926 ADENO
CL2001032314AA (testset)ADENO0.951380.04862 ADENO
CL2001032316AA (testset)ADENO0.954080.04592 ADENO
CL2001032601AA (testset)ADENO0.91230.0877 ADENO
CL2001032602AA (testset)ADENO0.993540.00646 ADENO
CL2001032604AA (testset)ADENO0.96060.0394 ADENO
CL2001032607AA (testset)other0.000830.99917 other
CL2001032608AA (testset)other0.230950.76905 other
CL2001032610AA (testset)ADENO0.644180.35582 ADENO
CL2001032612AA (testset)ADENO0.911010.08899 ADENO
CL2001032613AA (testset)ADENO0.980350.01965 ADENO
CL2001032614AA (testset)ADENO0.966020.03398 ADENO
CL2001032616AA (testset)ADENO0.96260.0374 ADENO
CL2001032617AA (testset)ADENO0.964810.03519 ADENO
CL2001032620AA (testset)ADENO0.978580.02142 ADENO
CL2001032625AA (testset)ADENO0.940170.05983 ADENO
CL2001032627AA (testset)other0.280720.71928 other
CL2001032628AA (testset)ADENO0.989520.01048 ADENO
CL2001032629AA (testset)other0.001190.99881 other
CL2001032630AA (testset)other0.001120.99888 other
CL2001032632AA (testset)other0.111410.88859 other
CL2001032638AA (testset)ADENO0.768640.23136 ADENO
CL2001032640AA (testset)ADENO0.998520.00148 ADENO
CL2001032643AA (testset)ADENO0.949340.05066 ADENO
CL2001032644AA (testset)other0.175030.82497 other
CL2001032647AA (testset)ADENO0.998450.00155 ADENO
CL2001032701AA (testset)ADENO0.977090.02291 ADENO
CL2001032702AA (testset)ADENO0.997790.00221 ADENO
CL2001032703AA (testset)ADENO0.979270.02073 ADENO
CL2001032704AA (testset)ADENO0.994510.00549 ADENO
CL2001032706AA (testset)ADENO0.992670.00733 ADENO
CL2001032709AA (testset)ADENO0.978570.02143 ADENO
CL2001032716AA (testset)ADENO0.980060.01994 ADENO
CL2001032717AA (testset)ADENO0.589670.41033 ADENO
CL2001032718AA (testset)other0.250160.74984 other
CL2001032719AA (testset)other0.86790.1321 ADENO
CL2001032720AA (testset)other0.086720.91328 other
CL2001032722AA (testset)other0.000190.99981 other
CL2001032724AA (testset)other0.84640.1536 ADENO
CL2001032725AA (testset)other0.448210.55179 other
CL2001032727AA (testset)other0.470710.52929 other
CL2001032729AA (testset)ADENO0.993150.00685 ADENO
CL2001032730AA (testset)ADENO0.994030.00597 ADENO
CL2001032732AA (testset)other0.425760.57424 other
CL2001032733AA (testset)ADENO0.986890.01311 ADENO
CL2001032738AA (testset)ADENO0.985510.01449 ADENO
CL2001032742AA (testset)ADENO0.999870.00013 ADENO
CL2001032746AA (testset)ADENO0.943610.05639 ADENO
CL2001032747AA (testset)ADENO0.995150.00485 ADENO
CL2001032833AA (testset)ADENO0.965980.03402 ADENO
CL2001032836AA (testset)ADENO0.929660.07034 ADENO
CL2001032838AA (testset)ADENO0.998910.00109 ADENO
CL2001032839AA (testset)ADENO0.915220.08478 ADENO
CL2001032841AA (testset)ADENO0.992080.00792 ADENO
CL2001032842AA (testset)ADENO0.988490.01151 ADENO
CL2001032843AA (testset)ADENO0.994390.00561 ADENO
CL2001032845AA (testset)ADENO0.983880.01612 ADENO
CL2001032846AA (testset)ADENO0.999690.00031 ADENO
CL2001032847AA (testset)other6e-050.99994 other
CL2001032848AA (testset)ADENO0.669680.33032 ADENO
CL2001032850AA (testset)other0.000210.99979 other
CL2001032853AA (testset)other0.384750.61525 other
CL2001032854AA (testset)other0.001710.99829 other
CL2001032856AA (testset)ADENO0.935410.06459 ADENO
CL2001032857AA (testset)ADENO0.995050.00495 ADENO
CL2001032860AA (testset)other2e-050.99998 other
CL2001040305AA (testset)ADENO0.800220.19978 ADENO
CL2001040306AA (testset)ADENO0.996070.00393 ADENO
CL2001041708AA (testset)ADENO0.887380.11262 ADENO
CL2001041711AA (testset)ADENO0.954590.04541 ADENO
CL2001041716AA (testset)ADENO0.897510.10249 ADENO
CL2001042501AA (testset)other0.000140.99986 other
CL2001042505AA (testset)ADENO0.718950.28105 ADENO
CL2001042506AA (testset)ADENO0.86860.1314 ADENO

 


Generated by StAM on Tue Sep 7 18:09:16 2004