GO:0006355


GO:0006355

regulation of transcription, DNA-dependent
(annotated genes)

Biological
Process

Parent node

This leaf node contains 1136 genes

The following 127 of these are used in classification:

 SymbolGenenameADENO scoreother score
41338_atAES amino-terminal enhancer of split-0.23770.5162
33157_atINSM1 insulinoma-associated 1-0.17480.3796
41337_atAES amino-terminal enhancer of split-0.1720.3735
39117_atPHF2 PHD finger protein 2-0.16960.3684
38146_atST18 suppression of tumorigenicity 18 (breast carcinoma) (zinc finger protein)-0.15460.3357
33355_atPBX1 pre-B-cell leukemia transcription factor 1-0.15260.3314
41388_atMEIS2 Meis1, myeloid ecotropic viral integration site 1 homolog 2 (mouse)-0.14960.325
36412_s_atIRF7 interferon regulatory factor 70.1465-0.3181
31791_atTP73L tumor protein p73-like-0.13340.2898
38918_atSOX13 SRY (sex determining region Y)-box 13-0.13290.2886
33108_i_atSOX2 SRY (sex determining region Y)-box 2-0.11450.2487
38354_atCEBPB CCAAT/enhancer binding protein (C/EBP), beta0.1118-0.2428
32034_atZNF217 zinc finger protein 2170.1078-0.2342
33754_atTITF1 thyroid transcription factor 10.1021-0.2217
33109_f_atSOX2 SRY (sex determining region Y)-box 2-0.10130.2201
34355_atMECP2 methyl CpG binding protein 2 (Rett syndrome)-0.09930.2156
130_s_atTITF1 thyroid transcription factor 10.0989-0.2147
34724_atGRLF1 glucocorticoid receptor DNA binding factor 1-0.09690.2105
40709_atZNF271 zinc finger protein 271-0.0950.2064
38692_atNAB1 NGFI-A binding protein 1 (EGR1 binding protein 1)-0.09410.2044
1388_g_atVDR vitamin D (1,25- dihydroxyvitamin D3) receptor0.094-0.2041
943_atRUNX1 runt-related transcription factor 1 (acute myeloid leukemia 1; aml1 oncogene)0.0926-0.2011
36899_atSATB1 special AT-rich sequence binding protein 1 (binds to nuclear matrix/scaffold-associating DNA's)-0.08710.1892
38439_atNFE2L1 nuclear factor (erythroid-derived 2)-like 1-0.08440.1833
38640_atZT86 zinc finger protein0.0841-0.1826
33443_atHSF2 heat shock transcription factor 2-0.08390.1823
41344_s_atPURA purine-rich element binding protein A-0.08190.1778
840_atMYST3 MYST histone acetyltransferase (monocytic leukemia) 3-0.07810.1697
33316_atTOX thymus high mobility group box protein TOX-0.07760.1686
466_atGTF2I general transcription factor II, i-0.07380.1602
33131_atSOX4 SRY (sex determining region Y)-box 40.0733-0.1592
32087_atHSF2 heat shock transcription factor 2-0.07230.1571
202_atHSF2 heat shock transcription factor 2-0.07010.1523
33529_atADH7 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide-0.06810.1479
1980_s_atNME2 non-metastatic cells 2, protein (NM23B) expressed in0.066-0.1433
35022_atSOX5 SRY (sex determining region Y)-box 5-0.06470.1406
1535_atCHES1 checkpoint suppressor 1-0.06380.1386
35450_s_atGTF2I general transcription factor II, i-0.06220.1352
38084_atCBX3 chromobox homolog 3 (HP1 gamma homolog, Drosophila)0.0612-0.1328
34990_atSETBP1 SET binding protein 1-0.05980.1299
37561_atNFYA nuclear transcription factor Y, alpha0.0595-0.1292
33415_atNME2 non-metastatic cells 2, protein (NM23B) expressed in0.0584-0.1269
440_atNFIC nuclear factor I/C (CCAAT-binding transcription factor)-0.05750.1248
711_atTCF2 transcription factor 2, hepatic; LF-B3; variant hepatic nuclear factor0.0568-0.1233
39560_atCBX6 chromobox homolog 6-0.05530.1201
274_atZNF148 zinc finger protein 148 (pHZ-52)-0.05480.119
32712_atMYT1L myelin transcription factor 1-like-0.05440.1181
39421_atRUNX1 runt-related transcription factor 1 (acute myeloid leukemia 1; aml1 oncogene)0.054-0.1173
38805_atTGIF TGFB-induced factor (TALE family homeobox)0.0532-0.1155
35638_atCBFA2T1 core-binding factor, runt domain, alpha subunit 2; translocated to, 1; cyclin D-related-0.05260.1142
33714_atHMGB3 high-mobility group box 30.0522-0.1133
36221_atACYP2 acylphosphatase 2, muscle type-0.0510.1107
32253_atRERE arginine-glutamic acid dipeptide (RE) repeats-0.04990.1085
1218_atNR2F6 nuclear receptor subfamily 2, group F, member 60.0484-0.1051
39698_atHOP homeodomain-only protein0.048-0.1043
41231_f_atHMGN2 high-mobility group nucleosomal binding domain 2-0.04440.0964
41355_atBCL11A B-cell CLL/lymphoma 11A (zinc finger protein)-0.04350.0946
33106_atNR1H3 nuclear receptor subfamily 1, group H, member 30.0427-0.0927
32696_atPBX3 pre-B-cell leukemia transcription factor 3-0.04160.0903
40359_atC11orf13 chromosome 11 open reading frame 130.0405-0.088
38085_atCBX3 chromobox homolog 3 (HP1 gamma homolog, Drosophila)0.0398-0.0865
32543_atCALR calreticulin0.0396-0.0861
41466_s_atZNF148 zinc finger protein 148 (pHZ-52)-0.0390.0847
39942_atBATF basic leucine zipper transcription factor, ATF-like0.0387-0.084
40445_atELF3 E74-like factor 3 (ets domain transcription factor, epithelial-specific )0.0384-0.0835
32066_g_atCREM cAMP responsive element modulator-0.03760.0817
39756_g_atXBP1 X-box binding protein 10.037-0.0803
32063_atPBX1 pre-B-cell leukemia transcription factor 1-0.03690.0802
33329_atNFIC nuclear factor I/C (CCAAT-binding transcription factor)-0.03590.078
37920_atPITX1 paired-like homeodomain transcription factor 1-0.03360.0731
507_s_atELF2 E74-like factor 2 (ets domain transcription factor)-0.03340.0724
37625_atIRF4 interferon regulatory factor 40.0328-0.0713
39990_atISL1 ISL1 transcription factor, LIM/homeodomain, (islet-1)-0.03080.0669
41087_atDLX5 distal-less homeo box 5-0.03080.0668
38766_atSRCAP Snf2-related CBP activator protein0.0308-0.0668
1969_s_atCDK7 cyclin-dependent kinase 7 (MO15 homolog, Xenopus laevis, cdk-activating kinase)0.0303-0.0658
40362_atNFKB2 nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100)0.03-0.0651
38506_atTCF2 transcription factor 2, hepatic; LF-B3; variant hepatic nuclear factor0.0297-0.0645
37567_atSALL2 sal-like 2 (Drosophila)-0.02840.0616
38028_atDAT1 neuronal specific transcription factor DAT10.028-0.0608
33317_atCDK7 cyclin-dependent kinase 7 (MO15 homolog, Xenopus laevis, cdk-activating kinase)0.0269-0.0585
39681_atZNF145 zinc finger protein 145 (Kruppel-like, expressed in promyelocytic leukemia)-0.02610.0568
39722_atNCOR1 nuclear receptor co-repressor 1-0.02580.056
39755_atXBP1 X-box binding protein 10.0253-0.0549
33339_g_atSTAT1 signal transducer and activator of transcription 1, 91kDa0.0242-0.0525
1785_atJARID1A Jumonji, AT rich interactive domain 1A (RBP2-like)-0.02390.0519
41000_atCHES1 checkpoint suppressor 1-0.02360.0512
41310_f_atNR2F6 nuclear receptor subfamily 2, group F, member 60.0228-0.0496
38795_s_atUBTF upstream binding transcription factor, RNA polymerase I-0.02230.0483
34296_atMID1 midline 1 (Opitz/BBB syndrome)-0.02210.0479
39072_atMXI1 MAX interacting protein 1-0.02170.0471
654_atMXI1 MAX interacting protein 1-0.02160.047
40791_atPOLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa-0.02150.0467
41356_atBCL11A B-cell CLL/lymphoma 11A (zinc finger protein)-0.02130.0462
37010_atGTF2A2 general transcription factor IIA, 2, 12kDa-0.0190.0413
1410_atVDR vitamin D (1,25- dihydroxyvitamin D3) receptor0.0184-0.04
869_atGTF2A2 general transcription factor IIA, 2, 12kDa-0.0180.039
39701_atPEG3 paternally expressed 3-0.01740.0377
40375_atEGR3 early growth response 3-0.01730.0376
32067_atCREM cAMP responsive element modulator-0.01730.0375
35846_atTHRA thyroid hormone receptor, alpha (erythroblastic leukemia viral (v-erb-a) oncogene homolog, avian)-0.01610.0351
40790_atBHLHB2 basic helix-loop-helix domain containing, class B, 20.0159-0.0346
32099_atSAFB2 scaffold attachment factor B2-0.01510.0328
33865_atBS69 adenovirus 5 E1A binding protein-0.01460.0316
38810_atHDAC5 histone deacetylase 5-0.01390.0301
33440_atTCF8 transcription factor 8 (represses interleukin 2 expression)-0.01180.0257
41465_atZNF148 zinc finger protein 148 (pHZ-52)-0.01150.0249
34626_atHIC1 hypermethylated in cancer 10.0113-0.0246
38314_atCIC capicua homolog (Drosophila)-0.01130.0245
371_atIRF3 interferon regulatory factor 30.0111-0.0242
35203_atMYST4 MYST histone acetyltransferase (monocytic leukemia) 4-0.01060.0229
35718_atSP110 SP110 nuclear body protein0.0105-0.0229
41030_atFOXJ1 forkhead box J10.0083-0.0179
37928_atNFYB nuclear transcription factor Y, beta-0.00790.0171
40199_atMSX1 msh homeo box homolog 1 (Drosophila)-0.00710.0154
37152_atPPARD peroxisome proliferative activated receptor, delta0.0062-0.0135
31797_atTBPL1 TBP-like 1-0.00580.0125
33783_atPLXNB1 plexin B1-0.00510.0111
40691_atZNF274 zinc finger protein 2740.0045-0.0098
35352_atARNT2 aryl-hydrocarbon receptor nuclear translocator 2-0.0040.0088
AFFX-HUMISGF3A/M97935_5_atSTAT1 signal transducer and activator of transcription 1, 91kDa0.0034-0.0075
1900_atRB1 retinoblastoma 1 (including osteosarcoma)-0.00240.0053
41050_atTAF5 TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 100kDa-0.00220.0048
33360_atFBXL11 F-box and leucine-rich repeat protein 110.002-0.0044
37194_atGATA2 GATA binding protein 2-0.00110.0025
35019_atZNF254 zinc finger protein 2540.001-0.0023
37353_g_atSP100 nuclear antigen Sp1007e-04-0.0014

Performance on training data

 SensitivitySpecificity
ADENO0.956830.92188
other0.921880.95683

Performance on test data

 SensitivitySpecificity
ADENO0.956830.92188
other0.921880.95683

Predictions

 ClassADENOotherPredictionn
CL2001031606AA (testset)other0.539690.46031 ADENO
CL2001031607AA (testset)other0.005550.99445 other
CL2001031608AA (testset)ADENO0.976990.02301 ADENO
CL2001031609AA (testset)other01 other
CL2001031611AA (testset)ADENO0.999520.00048 ADENO
CL2001031612AA (testset)ADENO0.964790.03521 ADENO
CL2001031613AA (testset)ADENO0.899510.10049 ADENO
CL2001031615AA (testset)ADENO0.99870.0013 ADENO
CL2001031616AA (testset)ADENO0.992510.00749 ADENO
CL2001031618AA (testset)ADENO0.999620.00038 ADENO
CL2001031620AA (testset)other0.004940.99506 other
CL2001031621AA (testset)other0.013370.98663 other
CL2001031622AA (testset)ADENO0.015370.98463 other
CL2001031625AA (testset)ADENO0.999850.00015 ADENO
CL2001031627AA (testset)ADENO0.999860.00014 ADENO
CL2001031628AA (testset)ADENO10 ADENO
CL2001031629AA (testset)ADENO0.963030.03697 ADENO
CL2001031630AA (testset)ADENO0.999964e-05 ADENO
CL2001031631AA (testset)ADENO0.999919e-05 ADENO
CL2001031632AA (testset)ADENO0.996950.00305 ADENO
CL2001031634AA (testset)ADENO0.97880.0212 ADENO
CL2001031635AA (testset)ADENO0.999440.00056 ADENO
CL2001031636AA (testset)ADENO0.989120.01088 ADENO
CL2001032002AA (testset)ADENO0.996780.00322 ADENO
CL2001032005AA (testset)ADENO0.846730.15327 ADENO
CL2001032008AA (testset)ADENO0.999420.00058 ADENO
CL2001032009AA (testset)ADENO0.999946e-05 ADENO
CL2001032010AA (testset)other0.915180.08482 ADENO
CL2001032011AA (testset)ADENO0.998040.00196 ADENO
CL2001032012AA (testset)ADENO0.998850.00115 ADENO
CL2001032013AA (testset)ADENO0.997080.00292 ADENO
CL2001032015AA (testset)ADENO0.560810.43919 ADENO
CL2001032016AA (testset)ADENO0.999780.00022 ADENO
CL2001032019AA (testset)ADENO0.999928e-05 ADENO
CL2001032020AA (testset)ADENO0.999973e-05 ADENO
CL2001032025AA (testset)ADENO0.99991e-04 ADENO
CL2001032026AA (testset)ADENO0.998890.00111 ADENO
CL2001032027AA (testset)ADENO0.994730.00527 ADENO
CL2001032030AA (testset)ADENO0.998410.00159 ADENO
CL2001032031AA (testset)ADENO0.979650.02035 ADENO
CL2001032032AA (testset)ADENO0.983970.01603 ADENO
CL2001032034AA (testset)ADENO0.654920.34508 ADENO
CL2001032036AA (testset)ADENO0.048020.95198 other
CL2001032041AA (testset)other0.096720.90328 other
CL2001032043AA (testset)other0.000260.99974 other
CL2001032044AA (testset)other01 other
CL2001032045AA (testset)other0.064950.93505 other
CL2001032046AA (testset)other0.07580.9242 other
CL2001032101AA (testset)other01 other
CL2001032102AA (testset)other0.103640.89636 other
CL2001032103AA (testset)ADENO0.999410.00059 ADENO
CL2001032104AA (testset)ADENO0.999919e-05 ADENO
CL2001032105AA (testset)ADENO0.999973e-05 ADENO
CL2001032107AA (testset)ADENO0.999860.00014 ADENO
CL2001032108AA (testset)ADENO0.999670.00033 ADENO
CL2001032109AA (testset)ADENO0.486370.51363 other
CL2001032110AA (testset)ADENO0.999340.00066 ADENO
CL2001032111AA (testset)ADENO0.955840.04416 ADENO
CL2001032113AA (testset)ADENO0.978060.02194 ADENO
CL2001032114AA (testset)ADENO0.999520.00048 ADENO
CL2001032115AA (testset)ADENO0.998080.00192 ADENO
CL2001032116AA (testset)ADENO0.999630.00037 ADENO
CL2001032117AA (testset)ADENO0.999946e-05 ADENO
CL2001032121AA (testset)other01 other
CL2001032122AA (testset)other0.009840.99016 other
CL2001032124AA (testset)other01 other
CL2001032125AA (testset)ADENO0.995060.00494 ADENO
CL2001032127AA (testset)other01 other
CL2001032128AA (testset)other0.002780.99722 other
CL2001032129AA (testset)other0.002510.99749 other
CL2001032130AA (testset)ADENO0.999730.00027 ADENO
CL2001032132AA (testset)ADENO0.995820.00418 ADENO
CL2001032134AA (testset)ADENO0.969780.03022 ADENO
CL2001032135AA (testset)ADENO0.992470.00753 ADENO
CL2001032136AA (testset)ADENO0.993850.00615 ADENO
CL2001032138AA (testset)ADENO0.999964e-05 ADENO
CL2001032141AA (testset)ADENO0.997010.00299 ADENO
CL2001032142AA (testset)ADENO0.165370.83463 other
CL2001032144AA (testset)other0.078420.92158 other
CL2001032145AA (testset)other01 other
CL2001032147AA (testset)other0.046940.95306 other
CL2001032149AA (testset)ADENO0.993150.00685 ADENO
CL2001032151AA (testset)other01 other
CL2001032152AA (testset)other01 other
CL2001032153AA (testset)other0.001080.99892 other
CL2001032155AA (testset)ADENO0.447840.55216 other
CL2001032156AA (testset)ADENO0.575470.42453 ADENO
CL2001032202AA (testset)other0.015650.98435 other
CL2001032206AA (testset)other0.281460.71854 other
CL2001032207AA (testset)other0.07090.9291 other
CL2001032209AA (testset)other0.001160.99884 other
CL2001032210AA (testset)other01 other
CL2001032211AA (testset)ADENO0.999380.00062 ADENO
CL2001032212AA (testset)ADENO0.999020.00098 ADENO
CL2001032213AA (testset)ADENO0.631430.36857 ADENO
CL2001032214AA (testset)ADENO0.735240.26476 ADENO
CL2001032217AA (testset)other8e-050.99992 other
CL2001032218AA (testset)other0.061620.93838 other
CL2001032219AA (testset)other01 other
CL2001032220AA (testset)other0.060810.93919 other
CL2001032222AA (testset)other0.059870.94013 other
CL2001032229AA (testset)ADENO0.99955e-04 ADENO
CL2001032231AA (testset)other0.178730.82127 other
CL2001032232AA (testset)ADENO0.999830.00017 ADENO
CL2001032233AA (testset)ADENO0.999964e-05 ADENO
CL2001032238AA (testset)other1e-050.99999 other
CL2001032239AA (testset)other0.001180.99882 other
CL2001032240AA (testset)other0.002690.99731 other
CL2001032241AA (testset)ADENO0.99946e-04 ADENO
CL2001032242AA (testset)ADENO0.999982e-05 ADENO
CL2001032243AA (testset)ADENO0.998960.00104 ADENO
CL2001032248AA (testset)ADENO0.997840.00216 ADENO
CL2001032249AA (testset)ADENO0.999790.00021 ADENO
CL2001032252AA (testset)ADENO0.988230.01177 ADENO
CL2001032254AA (testset)ADENO0.99991e-04 ADENO
CL2001032255AA (testset)ADENO0.999880.00012 ADENO
CL2001032256AA (testset)other0.947880.05212 ADENO
CL2001032259AA (testset)ADENO0.883780.11622 ADENO
CL2001032260AA (testset)other0.000540.99946 other
CL2001032301AA (testset)ADENO0.975130.02487 ADENO
CL2001032304AA (testset)other0.745720.25428 ADENO
CL2001032305AA (testset)other0.145970.85403 other
CL2001032306AA (testset)ADENO0.998520.00148 ADENO
CL2001032307AA (testset)ADENO0.888360.11164 ADENO
CL2001032308AA (testset)ADENO0.991540.00846 ADENO
CL2001032309AA (testset)ADENO0.999720.00028 ADENO
CL2001032310AA (testset)ADENO0.999210.00079 ADENO
CL2001032311AA (testset)ADENO0.999630.00037 ADENO
CL2001032312AA (testset)ADENO0.999991e-05 ADENO
CL2001032313AA (testset)ADENO0.999330.00067 ADENO
CL2001032314AA (testset)ADENO0.999937e-05 ADENO
CL2001032316AA (testset)ADENO0.997720.00228 ADENO
CL2001032601AA (testset)ADENO0.999750.00025 ADENO
CL2001032602AA (testset)ADENO0.998960.00104 ADENO
CL2001032604AA (testset)ADENO0.999410.00059 ADENO
CL2001032607AA (testset)other01 other
CL2001032608AA (testset)other0.004840.99516 other
CL2001032610AA (testset)ADENO0.997780.00222 ADENO
CL2001032612AA (testset)ADENO0.999060.00094 ADENO
CL2001032613AA (testset)ADENO0.999820.00018 ADENO
CL2001032614AA (testset)ADENO0.997530.00247 ADENO
CL2001032616AA (testset)ADENO0.993760.00624 ADENO
CL2001032617AA (testset)ADENO0.997670.00233 ADENO
CL2001032620AA (testset)ADENO0.99919e-04 ADENO
CL2001032625AA (testset)ADENO0.974280.02572 ADENO
CL2001032627AA (testset)other0.150710.84929 other
CL2001032628AA (testset)ADENO0.999973e-05 ADENO
CL2001032629AA (testset)other01 other
CL2001032630AA (testset)other01 other
CL2001032632AA (testset)other0.000410.99959 other
CL2001032638AA (testset)ADENO0.970790.02921 ADENO
CL2001032640AA (testset)ADENO0.999450.00055 ADENO
CL2001032643AA (testset)ADENO0.999420.00058 ADENO
CL2001032644AA (testset)other0.002710.99729 other
CL2001032647AA (testset)ADENO0.99955e-04 ADENO
CL2001032701AA (testset)ADENO0.999830.00017 ADENO
CL2001032702AA (testset)ADENO0.999928e-05 ADENO
CL2001032703AA (testset)ADENO0.999690.00031 ADENO
CL2001032704AA (testset)ADENO0.929050.07095 ADENO
CL2001032706AA (testset)ADENO0.99973e-04 ADENO
CL2001032709AA (testset)ADENO0.999890.00011 ADENO
CL2001032716AA (testset)ADENO0.76130.2387 ADENO
CL2001032717AA (testset)ADENO0.999030.00097 ADENO
CL2001032718AA (testset)other0.002940.99706 other
CL2001032719AA (testset)other0.178810.82119 other
CL2001032720AA (testset)other1e-050.99999 other
CL2001032722AA (testset)other01 other
CL2001032724AA (testset)other0.945620.05438 ADENO
CL2001032725AA (testset)other0.009050.99095 other
CL2001032727AA (testset)other0.316550.68345 other
CL2001032729AA (testset)ADENO0.999880.00012 ADENO
CL2001032730AA (testset)ADENO0.999919e-05 ADENO
CL2001032732AA (testset)other0.018720.98128 other
CL2001032733AA (testset)ADENO0.999973e-05 ADENO
CL2001032738AA (testset)ADENO0.999946e-05 ADENO
CL2001032742AA (testset)ADENO0.902550.09745 ADENO
CL2001032746AA (testset)ADENO0.999260.00074 ADENO
CL2001032747AA (testset)ADENO0.997780.00222 ADENO
CL2001032833AA (testset)ADENO0.847520.15248 ADENO
CL2001032836AA (testset)ADENO0.999919e-05 ADENO
CL2001032838AA (testset)ADENO0.997010.00299 ADENO
CL2001032839AA (testset)ADENO0.990340.00966 ADENO
CL2001032841AA (testset)ADENO0.999973e-05 ADENO
CL2001032842AA (testset)ADENO0.999210.00079 ADENO
CL2001032843AA (testset)ADENO0.99830.0017 ADENO
CL2001032845AA (testset)ADENO0.999240.00076 ADENO
CL2001032846AA (testset)ADENO0.999973e-05 ADENO
CL2001032847AA (testset)other01 other
CL2001032848AA (testset)ADENO0.02090.9791 other
CL2001032850AA (testset)other01 other
CL2001032853AA (testset)other0.006370.99363 other
CL2001032854AA (testset)other1e-050.99999 other
CL2001032856AA (testset)ADENO0.998930.00107 ADENO
CL2001032857AA (testset)ADENO0.999620.00038 ADENO
CL2001032860AA (testset)other01 other
CL2001040305AA (testset)ADENO0.999860.00014 ADENO
CL2001040306AA (testset)ADENO0.999670.00033 ADENO
CL2001041708AA (testset)ADENO0.999860.00014 ADENO
CL2001041711AA (testset)ADENO0.999680.00032 ADENO
CL2001041716AA (testset)ADENO0.999220.00078 ADENO
CL2001042501AA (testset)other01 other
CL2001042505AA (testset)ADENO0.954730.04527 ADENO
CL2001042506AA (testset)ADENO0.752520.24748 ADENO

 


Generated by StAM on Tue Sep 7 18:09:20 2004