GO:0006281


GO:0006281

DNA repair
(annotated genes)

Biological
Process

Parent node

This leaf node contains 100 genes

The following 54 of these are used in classification:

 SymbolGenenameADENO scoreother score
38908_s_atREV3L REV3-like, catalytic subunit of DNA polymerase zeta (yeast)-0.20310.4412
493_atCSNK1D casein kinase 1, delta0.1606-0.3487
35852_atCRY2 cryptochrome 2 (photolyase-like)-0.14290.3104
40359_atC11orf13 chromosome 11 open reading frame 130.1308-0.284
37303_atADPRTL1 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 10.1306-0.2837
1969_s_atCDK7 cyclin-dependent kinase 7 (MO15 homolog, Xenopus laevis, cdk-activating kinase)0.1206-0.262
33317_atCDK7 cyclin-dependent kinase 7 (MO15 homolog, Xenopus laevis, cdk-activating kinase)0.1171-0.2543
39670_atADPRTL3 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 30.1082-0.2349
1688_s_atMNAT1 menage a trois 1 (CAK assembly factor)-0.09520.2067
38019_atCSNK1E casein kinase 1, epsilon-0.09250.2008
1324_atRAD9A RAD9 homolog A (S. pombe)0.0819-0.1779
36634_atBTG2 BTG family, member 2-0.07990.1736
33125_atFANCL Fanconi anemia, complementation group L-0.06780.1472
32158_atRAD9A RAD9 homolog A (S. pombe)0.0658-0.143
41480_atRAD51C RAD51 homolog C (S. cerevisiae)-0.06510.1414
1884_s_atPCNA proliferating cell nuclear antigen-0.05440.1182
1382_atRPA1 replication protein A1, 70kDa-0.05270.1145
38481_atRPA1 replication protein A1, 70kDa-0.05140.1115
39651_atRECQL4 RecQ protein-like 40.0412-0.0896
39494_atGTF2H2 general transcription factor IIH, polypeptide 2, 44kDa-0.03870.0841
39154_atGADD45G growth arrest and DNA-damage-inducible, gamma0.0342-0.0742
37584_atFANCG Fanconi anemia, complementation group G-0.03340.0726
2000_atATM ataxia telangiectasia mutated (includes complementation groups A, C and D)-0.03210.0697
38863_atRFC5 replication factor C (activator 1) 5, 36.5kDa-0.02690.0585
38387_atMNAT1 menage a trois 1 (CAK assembly factor)-0.02560.0557
160034_s_atFANCC Fanconi anemia, complementation group C0.0209-0.0454
37277_atGTF2H2 general transcription factor IIH, polypeptide 2, 44kDa-0.01870.0407
36041_atEXO1 exonuclease 1-0.01610.0351
33843_g_atFANCG Fanconi anemia, complementation group G0.016-0.0348
37229_atATR ataxia telangiectasia and Rad3 related0.0131-0.0285
39664_atCKN1 Cockayne syndrome 1 (classical)-0.01160.0251
33715_r_atGTF2H2 general transcription factor IIH, polypeptide 2, 44kDa0.0115-0.025
41460_atRBM14 RNA binding motif protein 14-0.01140.0247
1544_atBLM Bloom syndrome-0.01110.0241
1924_atCCNH cyclin H-0.01080.0235
1824_s_atPCNA proliferating cell nuclear antigen-0.00960.0208
40411_atNCOA6 nuclear receptor coactivator 6-0.00890.0192
39643_atPOLG2 polymerase (DNA directed), gamma 2, accessory subunit0.0088-0.019
1872_atRAD51 RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae)-0.00840.0183
36912_atCHAF1B chromatin assembly factor 1, subunit B (p60)0.0068-0.0147
36949_atCSNK1D casein kinase 1, delta-0.00650.0141
36086_atCCNH cyclin H0.0058-0.0126
35713_atFANCC Fanconi anemia, complementation group C0.0043-0.0094
34380_atFANCG Fanconi anemia, complementation group G-0.0040.0086
35397_atPIR51 RAD51-interacting protein0.0034-0.0074
2080_s_atERCC6 excision repair cross-complementing rodent repair deficiency, complementation group 60.0023-0.005
33380_atPOLS polymerase (DNA directed) sigma-0.00230.0049
38153_atHUS1 HUS1 checkpoint homolog (S. pombe)-0.00220.0047
35546_atSMC1L1 SMC1 structural maintenance of chromosomes 1-like 1 (yeast)-0.00210.0045
33145_atFANCA Fanconi anemia, complementation group A0.0019-0.004
34763_atCSPG6 chondroitin sulfate proteoglycan 6 (bamacan)-0.00130.0028
651_atRPA3 replication protein A3, 14kDa5e-04-0.0011
40194_atGTF2H2 general transcription factor IIH, polypeptide 2, 44kDa3e-04-7e-04
1462_s_atPOLD1 polymerase (DNA directed), delta 1, catalytic subunit 125kDa2e-04-5e-04

Performance on training data

 SensitivitySpecificity
ADENO0.949640.78125
other0.781250.94964

Performance on test data

 SensitivitySpecificity
ADENO0.949640.78125
other0.781250.94964

Predictions

 ClassADENOotherPredictionn
CL2001031606AA (testset)other0.132350.86765 other
CL2001031607AA (testset)other0.135640.86436 other
CL2001031608AA (testset)ADENO0.804290.19571 ADENO
CL2001031609AA (testset)other0.029140.97086 other
CL2001031611AA (testset)ADENO0.606830.39317 ADENO
CL2001031612AA (testset)ADENO0.871720.12828 ADENO
CL2001031613AA (testset)ADENO0.843730.15627 ADENO
CL2001031615AA (testset)ADENO0.935050.06495 ADENO
CL2001031616AA (testset)ADENO0.838230.16177 ADENO
CL2001031618AA (testset)ADENO0.872260.12774 ADENO
CL2001031620AA (testset)other0.337460.66254 other
CL2001031621AA (testset)other0.259010.74099 other
CL2001031622AA (testset)ADENO0.118280.88172 other
CL2001031625AA (testset)ADENO0.95810.0419 ADENO
CL2001031627AA (testset)ADENO0.868690.13131 ADENO
CL2001031628AA (testset)ADENO0.929590.07041 ADENO
CL2001031629AA (testset)ADENO0.929050.07095 ADENO
CL2001031630AA (testset)ADENO0.981180.01882 ADENO
CL2001031631AA (testset)ADENO0.975960.02404 ADENO
CL2001031632AA (testset)ADENO0.724910.27509 ADENO
CL2001031634AA (testset)ADENO0.949690.05031 ADENO
CL2001031635AA (testset)ADENO0.952570.04743 ADENO
CL2001031636AA (testset)ADENO0.890650.10935 ADENO
CL2001032002AA (testset)ADENO0.944870.05513 ADENO
CL2001032005AA (testset)ADENO0.669110.33089 ADENO
CL2001032008AA (testset)ADENO0.933590.06641 ADENO
CL2001032009AA (testset)ADENO0.972610.02739 ADENO
CL2001032010AA (testset)other0.882750.11725 ADENO
CL2001032011AA (testset)ADENO0.8910.109 ADENO
CL2001032012AA (testset)ADENO0.977620.02238 ADENO
CL2001032013AA (testset)ADENO0.900290.09971 ADENO
CL2001032015AA (testset)ADENO0.611150.38885 ADENO
CL2001032016AA (testset)ADENO0.979340.02066 ADENO
CL2001032019AA (testset)ADENO0.951560.04844 ADENO
CL2001032020AA (testset)ADENO0.986590.01341 ADENO
CL2001032025AA (testset)ADENO0.964110.03589 ADENO
CL2001032026AA (testset)ADENO0.864890.13511 ADENO
CL2001032027AA (testset)ADENO0.804270.19573 ADENO
CL2001032030AA (testset)ADENO0.799030.20097 ADENO
CL2001032031AA (testset)ADENO0.636760.36324 ADENO
CL2001032032AA (testset)ADENO0.792850.20715 ADENO
CL2001032034AA (testset)ADENO0.581980.41802 ADENO
CL2001032036AA (testset)ADENO0.754820.24518 ADENO
CL2001032041AA (testset)other0.342650.65735 other
CL2001032043AA (testset)other0.322290.67771 other
CL2001032044AA (testset)other0.179360.82064 other
CL2001032045AA (testset)other0.483910.51609 other
CL2001032046AA (testset)other0.455320.54468 other
CL2001032101AA (testset)other0.340710.65929 other
CL2001032102AA (testset)other0.722170.27783 ADENO
CL2001032103AA (testset)ADENO0.855850.14415 ADENO
CL2001032104AA (testset)ADENO0.95220.0478 ADENO
CL2001032105AA (testset)ADENO0.968250.03175 ADENO
CL2001032107AA (testset)ADENO0.955090.04491 ADENO
CL2001032108AA (testset)ADENO0.900570.09943 ADENO
CL2001032109AA (testset)ADENO0.677810.32219 ADENO
CL2001032110AA (testset)ADENO0.907780.09222 ADENO
CL2001032111AA (testset)ADENO0.833980.16602 ADENO
CL2001032113AA (testset)ADENO0.953780.04622 ADENO
CL2001032114AA (testset)ADENO0.978470.02153 ADENO
CL2001032115AA (testset)ADENO0.913960.08604 ADENO
CL2001032116AA (testset)ADENO0.960130.03987 ADENO
CL2001032117AA (testset)ADENO0.962720.03728 ADENO
CL2001032121AA (testset)other0.10610.8939 other
CL2001032122AA (testset)other0.656250.34375 ADENO
CL2001032124AA (testset)other0.355620.64438 other
CL2001032125AA (testset)ADENO0.364160.63584 other
CL2001032127AA (testset)other0.108990.89101 other
CL2001032128AA (testset)other0.333770.66623 other
CL2001032129AA (testset)other0.289650.71035 other
CL2001032130AA (testset)ADENO0.834230.16577 ADENO
CL2001032132AA (testset)ADENO0.853140.14686 ADENO
CL2001032134AA (testset)ADENO0.802740.19726 ADENO
CL2001032135AA (testset)ADENO0.91150.0885 ADENO
CL2001032136AA (testset)ADENO0.854760.14524 ADENO
CL2001032138AA (testset)ADENO0.976780.02322 ADENO
CL2001032141AA (testset)ADENO0.954340.04566 ADENO
CL2001032142AA (testset)ADENO0.613540.38646 ADENO
CL2001032144AA (testset)other0.756660.24334 ADENO
CL2001032145AA (testset)other0.081610.91839 other
CL2001032147AA (testset)other0.492660.50734 other
CL2001032149AA (testset)ADENO0.795140.20486 ADENO
CL2001032151AA (testset)other0.024070.97593 other
CL2001032152AA (testset)other0.136620.86338 other
CL2001032153AA (testset)other0.248910.75109 other
CL2001032155AA (testset)ADENO0.610030.38997 ADENO
CL2001032156AA (testset)ADENO0.423970.57603 other
CL2001032202AA (testset)other0.468420.53158 other
CL2001032206AA (testset)other0.387050.61295 other
CL2001032207AA (testset)other0.368630.63137 other
CL2001032209AA (testset)other0.059880.94012 other
CL2001032210AA (testset)other0.249150.75085 other
CL2001032211AA (testset)ADENO0.711090.28891 ADENO
CL2001032212AA (testset)ADENO0.940070.05993 ADENO
CL2001032213AA (testset)ADENO0.444040.55596 other
CL2001032214AA (testset)ADENO0.458810.54119 other
CL2001032217AA (testset)other0.076910.92309 other
CL2001032218AA (testset)other0.437360.56264 other
CL2001032219AA (testset)other0.143250.85675 other
CL2001032220AA (testset)other0.54140.4586 ADENO
CL2001032222AA (testset)other0.658750.34125 ADENO
CL2001032229AA (testset)ADENO0.906030.09397 ADENO
CL2001032231AA (testset)other0.59170.4083 ADENO
CL2001032232AA (testset)ADENO0.987430.01257 ADENO
CL2001032233AA (testset)ADENO0.962210.03779 ADENO
CL2001032238AA (testset)other0.402120.59788 other
CL2001032239AA (testset)other0.369070.63093 other
CL2001032240AA (testset)other0.752710.24729 ADENO
CL2001032241AA (testset)ADENO0.879980.12002 ADENO
CL2001032242AA (testset)ADENO0.996730.00327 ADENO
CL2001032243AA (testset)ADENO0.934170.06583 ADENO
CL2001032248AA (testset)ADENO0.9380.062 ADENO
CL2001032249AA (testset)ADENO0.909810.09019 ADENO
CL2001032252AA (testset)ADENO0.978710.02129 ADENO
CL2001032254AA (testset)ADENO0.977220.02278 ADENO
CL2001032255AA (testset)ADENO0.990660.00934 ADENO
CL2001032256AA (testset)other0.853460.14654 ADENO
CL2001032259AA (testset)ADENO0.917590.08241 ADENO
CL2001032260AA (testset)other0.222560.77744 other
CL2001032301AA (testset)ADENO0.473080.52692 other
CL2001032304AA (testset)other0.753040.24696 ADENO
CL2001032305AA (testset)other0.762880.23712 ADENO
CL2001032306AA (testset)ADENO0.818510.18149 ADENO
CL2001032307AA (testset)ADENO0.870650.12935 ADENO
CL2001032308AA (testset)ADENO0.761950.23805 ADENO
CL2001032309AA (testset)ADENO0.9790.021 ADENO
CL2001032310AA (testset)ADENO0.87790.1221 ADENO
CL2001032311AA (testset)ADENO0.942510.05749 ADENO
CL2001032312AA (testset)ADENO0.949070.05093 ADENO
CL2001032313AA (testset)ADENO0.87760.1224 ADENO
CL2001032314AA (testset)ADENO0.832610.16739 ADENO
CL2001032316AA (testset)ADENO0.889510.11049 ADENO
CL2001032601AA (testset)ADENO0.924080.07592 ADENO
CL2001032602AA (testset)ADENO0.87220.1278 ADENO
CL2001032604AA (testset)ADENO0.955850.04415 ADENO
CL2001032607AA (testset)other0.09860.9014 other
CL2001032608AA (testset)other0.395970.60403 other
CL2001032610AA (testset)ADENO0.930570.06943 ADENO
CL2001032612AA (testset)ADENO0.603490.39651 ADENO
CL2001032613AA (testset)ADENO0.945270.05473 ADENO
CL2001032614AA (testset)ADENO0.900680.09932 ADENO
CL2001032616AA (testset)ADENO0.822610.17739 ADENO
CL2001032617AA (testset)ADENO0.864270.13573 ADENO
CL2001032620AA (testset)ADENO0.870560.12944 ADENO
CL2001032625AA (testset)ADENO0.840440.15956 ADENO
CL2001032627AA (testset)other0.575170.42483 ADENO
CL2001032628AA (testset)ADENO0.941440.05856 ADENO
CL2001032629AA (testset)other0.161640.83836 other
CL2001032630AA (testset)other0.432520.56748 other
CL2001032632AA (testset)other0.129660.87034 other
CL2001032638AA (testset)ADENO0.964180.03582 ADENO
CL2001032640AA (testset)ADENO0.934020.06598 ADENO
CL2001032643AA (testset)ADENO0.7940.206 ADENO
CL2001032644AA (testset)other0.400150.59985 other
CL2001032647AA (testset)ADENO0.935530.06447 ADENO
CL2001032701AA (testset)ADENO0.949720.05028 ADENO
CL2001032702AA (testset)ADENO0.746760.25324 ADENO
CL2001032703AA (testset)ADENO0.931750.06825 ADENO
CL2001032704AA (testset)ADENO0.750490.24951 ADENO
CL2001032706AA (testset)ADENO0.736860.26314 ADENO
CL2001032709AA (testset)ADENO0.98550.0145 ADENO
CL2001032716AA (testset)ADENO0.757360.24264 ADENO
CL2001032717AA (testset)ADENO0.895750.10425 ADENO
CL2001032718AA (testset)other0.244440.75556 other
CL2001032719AA (testset)other0.455830.54417 other
CL2001032720AA (testset)other0.025140.97486 other
CL2001032722AA (testset)other0.084370.91563 other
CL2001032724AA (testset)other0.754540.24546 ADENO
CL2001032725AA (testset)other0.626550.37345 ADENO
CL2001032727AA (testset)other0.391840.60816 other
CL2001032729AA (testset)ADENO0.877370.12263 ADENO
CL2001032730AA (testset)ADENO0.871990.12801 ADENO
CL2001032732AA (testset)other0.122030.87797 other
CL2001032733AA (testset)ADENO0.960790.03921 ADENO
CL2001032738AA (testset)ADENO0.931930.06807 ADENO
CL2001032742AA (testset)ADENO0.748110.25189 ADENO
CL2001032746AA (testset)ADENO0.928650.07135 ADENO
CL2001032747AA (testset)ADENO0.612390.38761 ADENO
CL2001032833AA (testset)ADENO0.950690.04931 ADENO
CL2001032836AA (testset)ADENO0.896040.10396 ADENO
CL2001032838AA (testset)ADENO0.932550.06745 ADENO
CL2001032839AA (testset)ADENO0.80280.1972 ADENO
CL2001032841AA (testset)ADENO0.945570.05443 ADENO
CL2001032842AA (testset)ADENO0.813730.18627 ADENO
CL2001032843AA (testset)ADENO0.897120.10288 ADENO
CL2001032845AA (testset)ADENO0.865490.13451 ADENO
CL2001032846AA (testset)ADENO0.955120.04488 ADENO
CL2001032847AA (testset)other0.105290.89471 other
CL2001032848AA (testset)ADENO0.382660.61734 other
CL2001032850AA (testset)other0.109570.89043 other
CL2001032853AA (testset)other0.272180.72782 other
CL2001032854AA (testset)other0.159350.84065 other
CL2001032856AA (testset)ADENO0.933710.06629 ADENO
CL2001032857AA (testset)ADENO0.980490.01951 ADENO
CL2001032860AA (testset)other0.061490.93851 other
CL2001040305AA (testset)ADENO0.812590.18741 ADENO
CL2001040306AA (testset)ADENO0.843690.15631 ADENO
CL2001041708AA (testset)ADENO0.926460.07354 ADENO
CL2001041711AA (testset)ADENO0.824880.17512 ADENO
CL2001041716AA (testset)ADENO0.922790.07721 ADENO
CL2001042501AA (testset)other0.117720.88228 other
CL2001042505AA (testset)ADENO0.868080.13192 ADENO
CL2001042506AA (testset)ADENO0.692250.30775 ADENO

 


Generated by StAM on Tue Sep 7 18:09:22 2004