Total number of samples: | 203 |
---|---|
Training samples: | 203 ( 139 from ADENO, 64 from other ) |
Test samples: | 203 ( 139 from ADENO, 64 from other ) |
Focus on class: | ADENO |
Data frm chip: | hgu95av2 |
Start node: | GO:0008150 ( biological_process ) |
Chip annotations for: | hgu95av2 |
---|---|
Chip data package: | data package version 1.5.1 Mon May 10 11:12:58 2004 |
GO data package: | GO package version 1.5.1 Mon May 10 11:46:39 2004 |
Root node chosen: | GO:0008150 ( biological_process ) |
Number of probesets on the chip: | 12625 |
Probesets annotated below GO:0008150 : | 8679 |
Number of nodes with direct annotations: | 1359 |
Total number of nodes: | 2204 |
Number of samples: | 203 |
---|---|
Number of classes: | 2 |
Class weights: | 'ADENO': 0.1 'other': 0.9 |
Class prior: | 'ADENO':0.685 'other':0.315 |
Shrinkage candidates: | 0, 0.095, 0.191, 0.286, 0.382, 0.477, 0.572, 0.668, 0.763, 0.859, 0.954, 1.05, 1.145, 1.24, 1.336, 1.431, 1.527, 1.622, 1.717, 1.813, 1.908, 2.004, 2.099, 2.195, 2.29, 2.385, 2.481, 2.576, 2.672, 2.767 |
Root.error.rate | Root.performance | Mean.redundancy | Nodes | Genes | |
---|---|---|---|---|---|
0 | 0.08374 | 1.41748 | 0.86404 | 2203 | 8678 |
0.095 | 0.08374 | 1.40305 | 0.8642 | 2203 | 8678 |
0.191 | 0.07389 | 1.38671 | 0.86417 | 2202 | 8574 |
0.286 | 0.07389 | 1.3681 | 0.86441 | 2202 | 8574 |
0.382 | 0.07389 | 1.34674 | 0.86471 | 2202 | 8574 |
0.477 | 0.07389 | 1.32207 | 0.86509 | 2202 | 8574 |
0.572 | 0.07389 | 1.29337 | 0.8656 | 2202 | 8574 |
0.668 | 0.07389 | 1.2598 | 0.86631 | 2202 | 8574 |
0.763 | 0.07389 | 1.22039 | 0.86737 | 2202 | 8574 |
0.859 | 0.06897 | 1.17417 | 0.86901 | 2201 | 8562 |
0.954 | 0.06897 | 1.12073 | 0.87286 | 2201 | 8562 |
1.05 | 0.06897 | 1.06651 | 0.94194 | 1196 | 8330 |
1.145 | 0.06897 | 1.00652 | 0.97802 | 991 | 8247 |
1.24 | 0.06897 | 0.93902 | 1.04264 | 753 | 8134 |
1.336 | 0.06897 | 0.87282 | 1.10776 | 594 | 7991 |
1.431 | 0.06897 | 0.80911 | 1.21404 | 446 | 7627 |
1.527 | 0.07882 | 0.77952 | 1.34662 | 338 | 7286 |
1.622 | 0.08867 | 0.76013 | 1.49026 | 269 | 6830 |
1.717 | 0.07882 | 0.74861 | 1.6344 | 220 | 6527 |
1.813 | 0.07389 | 0.72792 | 1.59609 | 204 | 5970 |
1.908 | 0.07882 | 0.68608 | 1.71831 | 149 | 5511 |
2.004 | 0.07389 | 0.64693 | 1.82006 | 112 | 4975 |
2.099 | 0.07389 | 0.59292 | 2.06824 | 78 | 4248 |
2.195 | 0.07882 | 0.523 | 2.47957 | 55 | 3662 |
2.29 | 0.08374 | 0.47732 | 3.3756 | 37 | 2797 |
2.385 | 0.07389 | 0.44992 | 3.13845 | 29 | 2313 |
2.481 | 0.07389 | 0.43428 | 4.03873 | 19 | 1541 |
2.576 | 0.07882 | 0.42781 | 3.37005 | 19 | 1541 |
2.672 | 0.04433 | 0.40562 | 6.2676 | 9 | 1136 |
Best Delta | Root Error Rate | Performance | Redundancy | #Nodes | #Genes | |
---|---|---|---|---|---|---|
0 | 0 | 0.0837 | 1.4175 | 0.864 | 2203 | 8678 |
0.1 | 0.9541 | 0.069 | 1.1207 | 0.8729 | 2201 | 8562 |
0.2 | 1.3358 | 0.069 | 0.8728 | 1.1078 | 594 | 7991 |
0.3 | 1.4312 | 0.069 | 0.8091 | 1.214 | 446 | 7627 |
0.4 | 1.4312 | 0.069 | 0.8091 | 1.214 | 446 | 7627 |
0.5 | 2.0991 | 0.0739 | 0.5929 | 2.0682 | 78 | 4248 |
0.6 | 2.1945 | 0.0788 | 0.523 | 2.4796 | 55 | 3662 |
0.7 | 2.5762 | 0.0788 | 0.4278 | 3.37 | 19 | 1541 |
0.8 | 2.5762 | 0.0788 | 0.4278 | 3.37 | 19 | 1541 |
0.9 | 2.5762 | 0.0788 | 0.4278 | 3.37 | 19 | 1541 |
1 | 2.6716 | 0.0443 | 0.4056 | 6.2676 | 9 | 1136 |
Number of classes: | 2 |
---|---|
Class weights: | 'ADENO': 0.1 'other': 0.9 |
Class prior: | 'ADENO':0.685 'other':0.315 |
Chosen shrinkage level: | 2.099 (by accepting the system default (after consulting weighting alternatives) ) |
Number of nodes left | 78 |
Number of accessible genes | 4248 |
Hover over a node to see its description, click on it to view its detailed results.
Number of samples: | 203 (139 from ADENO, 64 from other) |
---|---|
Classes: | ADENO, other |
Hover over a node description to see its ID, click on it to see detailed results.
GO:0008150 | biological_process | Biological Process |
GO:0003673 | Gene_Ontology (not in fit) |
---|
ID | Term | Weight |
---|---|---|
GO:0007610 | behavior | 0.00000 |
GO:0000004 | biological_process unknown | 0.11784 |
GO:0009987 | cellular process | 0.32246 |
GO:0007275 | development | 0.2809 |
GO:0008371 | obsolete biological process | 0.00000 |
GO:0007582 | physiological process | 0.2788 |
GO:0050789 | regulation of biological process | 0.00000 |
GO:0016032 | viral life cycle | 0.00000 |
Sensitivity | Specificity | |
---|---|---|
ADENO | 0.97842 | 0.875 |
other | 0.875 | 0.97842 |
Sensitivity | Specificity | |
---|---|---|
ADENO | 0.97842 | 0.89062 |
other | 0.89062 | 0.97842 |
Class | ADENO | other | Predictionn | |
---|---|---|---|---|
CL2001031606AA (testset) | other | 0.33278 | 0.66722 | other |
CL2001031607AA (testset) | other | 0.19632 | 0.80368 | other |
CL2001031608AA (testset) | ADENO | 0.86816 | 0.13184 | ADENO |
CL2001031609AA (testset) | other | 0.01813 | 0.98187 | other |
CL2001031611AA (testset) | ADENO | 0.86334 | 0.13666 | ADENO |
CL2001031612AA (testset) | ADENO | 0.89638 | 0.10362 | ADENO |
CL2001031613AA (testset) | ADENO | 0.93998 | 0.06002 | ADENO |
CL2001031615AA (testset) | ADENO | 0.94937 | 0.05063 | ADENO |
CL2001031616AA (testset) | ADENO | 0.91038 | 0.08962 | ADENO |
CL2001031618AA (testset) | ADENO | 0.94586 | 0.05414 | ADENO |
CL2001031620AA (testset) | other | 0.17534 | 0.82466 | other |
CL2001031621AA (testset) | other | 0.21433 | 0.78567 | other |
CL2001031622AA (testset) | ADENO | 0.43887 | 0.56113 | other |
CL2001031625AA (testset) | ADENO | 0.9754 | 0.0246 | ADENO |
CL2001031627AA (testset) | ADENO | 0.94903 | 0.05097 | ADENO |
CL2001031628AA (testset) | ADENO | 0.98304 | 0.01696 | ADENO |
CL2001031629AA (testset) | ADENO | 0.93835 | 0.06165 | ADENO |
CL2001031630AA (testset) | ADENO | 0.98576 | 0.01424 | ADENO |
CL2001031631AA (testset) | ADENO | 0.98838 | 0.01162 | ADENO |
CL2001031632AA (testset) | ADENO | 0.82454 | 0.17546 | ADENO |
CL2001031634AA (testset) | ADENO | 0.95417 | 0.04583 | ADENO |
CL2001031635AA (testset) | ADENO | 0.94336 | 0.05664 | ADENO |
CL2001031636AA (testset) | ADENO | 0.80827 | 0.19173 | ADENO |
CL2001032002AA (testset) | ADENO | 0.93204 | 0.06796 | ADENO |
CL2001032005AA (testset) | ADENO | 0.67854 | 0.32146 | ADENO |
CL2001032008AA (testset) | ADENO | 0.97914 | 0.02086 | ADENO |
CL2001032009AA (testset) | ADENO | 0.96429 | 0.03571 | ADENO |
CL2001032010AA (testset) | other | 0.77658 | 0.22342 | ADENO |
CL2001032011AA (testset) | ADENO | 0.94445 | 0.05555 | ADENO |
CL2001032012AA (testset) | ADENO | 0.95018 | 0.04982 | ADENO |
CL2001032013AA (testset) | ADENO | 0.94559 | 0.05441 | ADENO |
CL2001032015AA (testset) | ADENO | 0.76338 | 0.23662 | ADENO |
CL2001032016AA (testset) | ADENO | 0.98171 | 0.01829 | ADENO |
CL2001032019AA (testset) | ADENO | 0.99056 | 0.00944 | ADENO |
CL2001032020AA (testset) | ADENO | 0.98603 | 0.01397 | ADENO |
CL2001032025AA (testset) | ADENO | 0.95718 | 0.04282 | ADENO |
CL2001032026AA (testset) | ADENO | 0.88851 | 0.11149 | ADENO |
CL2001032027AA (testset) | ADENO | 0.95889 | 0.04111 | ADENO |
CL2001032030AA (testset) | ADENO | 0.95072 | 0.04928 | ADENO |
CL2001032031AA (testset) | ADENO | 0.92471 | 0.07529 | ADENO |
CL2001032032AA (testset) | ADENO | 0.87656 | 0.12344 | ADENO |
CL2001032034AA (testset) | ADENO | 0.69318 | 0.30682 | ADENO |
CL2001032036AA (testset) | ADENO | 0.39374 | 0.60626 | other |
CL2001032041AA (testset) | other | 0.17934 | 0.82066 | other |
CL2001032043AA (testset) | other | 0.16486 | 0.83514 | other |
CL2001032044AA (testset) | other | 0.03218 | 0.96782 | other |
CL2001032045AA (testset) | other | 0.17195 | 0.82805 | other |
CL2001032046AA (testset) | other | 0.22949 | 0.77051 | other |
CL2001032101AA (testset) | other | 0.08851 | 0.91149 | other |
CL2001032102AA (testset) | other | 0.35675 | 0.64325 | other |
CL2001032103AA (testset) | ADENO | 0.91912 | 0.08088 | ADENO |
CL2001032104AA (testset) | ADENO | 0.96286 | 0.03714 | ADENO |
CL2001032105AA (testset) | ADENO | 0.97044 | 0.02956 | ADENO |
CL2001032107AA (testset) | ADENO | 0.97258 | 0.02742 | ADENO |
CL2001032108AA (testset) | ADENO | 0.96653 | 0.03347 | ADENO |
CL2001032109AA (testset) | ADENO | 0.78243 | 0.21757 | ADENO |
CL2001032110AA (testset) | ADENO | 0.95156 | 0.04844 | ADENO |
CL2001032111AA (testset) | ADENO | 0.94918 | 0.05082 | ADENO |
CL2001032113AA (testset) | ADENO | 0.87763 | 0.12237 | ADENO |
CL2001032114AA (testset) | ADENO | 0.9281 | 0.0719 | ADENO |
CL2001032115AA (testset) | ADENO | 0.91633 | 0.08367 | ADENO |
CL2001032116AA (testset) | ADENO | 0.97955 | 0.02045 | ADENO |
CL2001032117AA (testset) | ADENO | 0.97428 | 0.02572 | ADENO |
CL2001032121AA (testset) | other | 0.07245 | 0.92755 | other |
CL2001032122AA (testset) | other | 0.49258 | 0.50742 | other |
CL2001032124AA (testset) | other | 0.05274 | 0.94726 | other |
CL2001032125AA (testset) | ADENO | 0.75725 | 0.24275 | ADENO |
CL2001032127AA (testset) | other | 0.02714 | 0.97286 | other |
CL2001032128AA (testset) | other | 0.17848 | 0.82152 | other |
CL2001032129AA (testset) | other | 0.11609 | 0.88391 | other |
CL2001032130AA (testset) | ADENO | 0.975 | 0.025 | ADENO |
CL2001032132AA (testset) | ADENO | 0.95197 | 0.04803 | ADENO |
CL2001032134AA (testset) | ADENO | 0.86621 | 0.13379 | ADENO |
CL2001032135AA (testset) | ADENO | 0.93986 | 0.06014 | ADENO |
CL2001032136AA (testset) | ADENO | 0.94297 | 0.05703 | ADENO |
CL2001032138AA (testset) | ADENO | 0.97093 | 0.02907 | ADENO |
CL2001032141AA (testset) | ADENO | 0.95634 | 0.04366 | ADENO |
CL2001032142AA (testset) | ADENO | 0.51379 | 0.48621 | ADENO |
CL2001032144AA (testset) | other | 0.34005 | 0.65995 | other |
CL2001032145AA (testset) | other | 0.02656 | 0.97344 | other |
CL2001032147AA (testset) | other | 0.25897 | 0.74103 | other |
CL2001032149AA (testset) | ADENO | 0.929 | 0.071 | ADENO |
CL2001032151AA (testset) | other | 0.01688 | 0.98312 | other |
CL2001032152AA (testset) | other | 0.04306 | 0.95694 | other |
CL2001032153AA (testset) | other | 0.07387 | 0.92613 | other |
CL2001032155AA (testset) | ADENO | 0.74377 | 0.25623 | ADENO |
CL2001032156AA (testset) | ADENO | 0.51218 | 0.48782 | ADENO |
CL2001032202AA (testset) | other | 0.15983 | 0.84017 | other |
CL2001032206AA (testset) | other | 0.33336 | 0.66664 | other |
CL2001032207AA (testset) | other | 0.15837 | 0.84163 | other |
CL2001032209AA (testset) | other | 0.07919 | 0.92081 | other |
CL2001032210AA (testset) | other | 0.04691 | 0.95309 | other |
CL2001032211AA (testset) | ADENO | 0.92494 | 0.07506 | ADENO |
CL2001032212AA (testset) | ADENO | 0.93855 | 0.06145 | ADENO |
CL2001032213AA (testset) | ADENO | 0.6026 | 0.3974 | ADENO |
CL2001032214AA (testset) | ADENO | 0.82721 | 0.17279 | ADENO |
CL2001032217AA (testset) | other | 0.1006 | 0.8994 | other |
CL2001032218AA (testset) | other | 0.24305 | 0.75695 | other |
CL2001032219AA (testset) | other | 0.0639 | 0.9361 | other |
CL2001032220AA (testset) | other | 0.2695 | 0.7305 | other |
CL2001032222AA (testset) | other | 0.5467 | 0.4533 | ADENO |
CL2001032229AA (testset) | ADENO | 0.94727 | 0.05273 | ADENO |
CL2001032231AA (testset) | other | 0.54369 | 0.45631 | ADENO |
CL2001032232AA (testset) | ADENO | 0.98839 | 0.01161 | ADENO |
CL2001032233AA (testset) | ADENO | 0.97744 | 0.02256 | ADENO |
CL2001032238AA (testset) | other | 0.09397 | 0.90603 | other |
CL2001032239AA (testset) | other | 0.13616 | 0.86384 | other |
CL2001032240AA (testset) | other | 0.32584 | 0.67416 | other |
CL2001032241AA (testset) | ADENO | 0.95475 | 0.04525 | ADENO |
CL2001032242AA (testset) | ADENO | 0.97936 | 0.02064 | ADENO |
CL2001032243AA (testset) | ADENO | 0.97617 | 0.02383 | ADENO |
CL2001032248AA (testset) | ADENO | 0.96904 | 0.03096 | ADENO |
CL2001032249AA (testset) | ADENO | 0.96492 | 0.03508 | ADENO |
CL2001032252AA (testset) | ADENO | 0.95508 | 0.04492 | ADENO |
CL2001032254AA (testset) | ADENO | 0.96149 | 0.03851 | ADENO |
CL2001032255AA (testset) | ADENO | 0.96489 | 0.03511 | ADENO |
CL2001032256AA (testset) | other | 0.8247 | 0.1753 | ADENO |
CL2001032259AA (testset) | ADENO | 0.83896 | 0.16104 | ADENO |
CL2001032260AA (testset) | other | 0.1006 | 0.8994 | other |
CL2001032301AA (testset) | ADENO | 0.76721 | 0.23279 | ADENO |
CL2001032304AA (testset) | other | 0.6129 | 0.3871 | ADENO |
CL2001032305AA (testset) | other | 0.60933 | 0.39067 | ADENO |
CL2001032306AA (testset) | ADENO | 0.94772 | 0.05228 | ADENO |
CL2001032307AA (testset) | ADENO | 0.85962 | 0.14038 | ADENO |
CL2001032308AA (testset) | ADENO | 0.77894 | 0.22106 | ADENO |
CL2001032309AA (testset) | ADENO | 0.9515 | 0.0485 | ADENO |
CL2001032310AA (testset) | ADENO | 0.93222 | 0.06778 | ADENO |
CL2001032311AA (testset) | ADENO | 0.94392 | 0.05608 | ADENO |
CL2001032312AA (testset) | ADENO | 0.95768 | 0.04232 | ADENO |
CL2001032313AA (testset) | ADENO | 0.89479 | 0.10521 | ADENO |
CL2001032314AA (testset) | ADENO | 0.89672 | 0.10328 | ADENO |
CL2001032316AA (testset) | ADENO | 0.87104 | 0.12896 | ADENO |
CL2001032601AA (testset) | ADENO | 0.96229 | 0.03771 | ADENO |
CL2001032602AA (testset) | ADENO | 0.97711 | 0.02289 | ADENO |
CL2001032604AA (testset) | ADENO | 0.96291 | 0.03709 | ADENO |
CL2001032607AA (testset) | other | 0.02848 | 0.97152 | other |
CL2001032608AA (testset) | other | 0.16221 | 0.83779 | other |
CL2001032610AA (testset) | ADENO | 0.95337 | 0.04663 | ADENO |
CL2001032612AA (testset) | ADENO | 0.89579 | 0.10421 | ADENO |
CL2001032613AA (testset) | ADENO | 0.96497 | 0.03503 | ADENO |
CL2001032614AA (testset) | ADENO | 0.88451 | 0.11549 | ADENO |
CL2001032616AA (testset) | ADENO | 0.92953 | 0.07047 | ADENO |
CL2001032617AA (testset) | ADENO | 0.91886 | 0.08114 | ADENO |
CL2001032620AA (testset) | ADENO | 0.95654 | 0.04346 | ADENO |
CL2001032625AA (testset) | ADENO | 0.89469 | 0.10531 | ADENO |
CL2001032627AA (testset) | other | 0.23259 | 0.76741 | other |
CL2001032628AA (testset) | ADENO | 0.97286 | 0.02714 | ADENO |
CL2001032629AA (testset) | other | 0.06558 | 0.93442 | other |
CL2001032630AA (testset) | other | 0.12875 | 0.87125 | other |
CL2001032632AA (testset) | other | 0.13197 | 0.86803 | other |
CL2001032638AA (testset) | ADENO | 0.94342 | 0.05658 | ADENO |
CL2001032640AA (testset) | ADENO | 0.97693 | 0.02307 | ADENO |
CL2001032643AA (testset) | ADENO | 0.92102 | 0.07898 | ADENO |
CL2001032644AA (testset) | other | 0.15212 | 0.84788 | other |
CL2001032647AA (testset) | ADENO | 0.95174 | 0.04826 | ADENO |
CL2001032701AA (testset) | ADENO | 0.968 | 0.032 | ADENO |
CL2001032702AA (testset) | ADENO | 0.97924 | 0.02076 | ADENO |
CL2001032703AA (testset) | ADENO | 0.92076 | 0.07924 | ADENO |
CL2001032704AA (testset) | ADENO | 0.94436 | 0.05564 | ADENO |
CL2001032706AA (testset) | ADENO | 0.97067 | 0.02933 | ADENO |
CL2001032709AA (testset) | ADENO | 0.98472 | 0.01528 | ADENO |
CL2001032716AA (testset) | ADENO | 0.79911 | 0.20089 | ADENO |
CL2001032717AA (testset) | ADENO | 0.92652 | 0.07348 | ADENO |
CL2001032718AA (testset) | other | 0.12224 | 0.87776 | other |
CL2001032719AA (testset) | other | 0.40727 | 0.59273 | other |
CL2001032720AA (testset) | other | 0.06355 | 0.93645 | other |
CL2001032722AA (testset) | other | 0.03457 | 0.96543 | other |
CL2001032724AA (testset) | other | 0.78056 | 0.21944 | ADENO |
CL2001032725AA (testset) | other | 0.2695 | 0.7305 | other |
CL2001032727AA (testset) | other | 0.26696 | 0.73304 | other |
CL2001032729AA (testset) | ADENO | 0.96094 | 0.03906 | ADENO |
CL2001032730AA (testset) | ADENO | 0.96432 | 0.03568 | ADENO |
CL2001032732AA (testset) | other | 0.22673 | 0.77327 | other |
CL2001032733AA (testset) | ADENO | 0.97082 | 0.02918 | ADENO |
CL2001032738AA (testset) | ADENO | 0.88934 | 0.11066 | ADENO |
CL2001032742AA (testset) | ADENO | 0.76481 | 0.23519 | ADENO |
CL2001032746AA (testset) | ADENO | 0.93198 | 0.06802 | ADENO |
CL2001032747AA (testset) | ADENO | 0.92658 | 0.07342 | ADENO |
CL2001032833AA (testset) | ADENO | 0.80945 | 0.19055 | ADENO |
CL2001032836AA (testset) | ADENO | 0.95995 | 0.04005 | ADENO |
CL2001032838AA (testset) | ADENO | 0.9808 | 0.0192 | ADENO |
CL2001032839AA (testset) | ADENO | 0.83682 | 0.16318 | ADENO |
CL2001032841AA (testset) | ADENO | 0.9612 | 0.0388 | ADENO |
CL2001032842AA (testset) | ADENO | 0.91712 | 0.08288 | ADENO |
CL2001032843AA (testset) | ADENO | 0.97232 | 0.02768 | ADENO |
CL2001032845AA (testset) | ADENO | 0.95993 | 0.04007 | ADENO |
CL2001032846AA (testset) | ADENO | 0.98256 | 0.01744 | ADENO |
CL2001032847AA (testset) | other | 0.03885 | 0.96115 | other |
CL2001032848AA (testset) | ADENO | 0.20624 | 0.79376 | other |
CL2001032850AA (testset) | other | 0.03536 | 0.96464 | other |
CL2001032853AA (testset) | other | 0.18842 | 0.81158 | other |
CL2001032854AA (testset) | other | 0.1064 | 0.8936 | other |
CL2001032856AA (testset) | ADENO | 0.95793 | 0.04207 | ADENO |
CL2001032857AA (testset) | ADENO | 0.96207 | 0.03793 | ADENO |
CL2001032860AA (testset) | other | 0.01473 | 0.98527 | other |
CL2001040305AA (testset) | ADENO | 0.94916 | 0.05084 | ADENO |
CL2001040306AA (testset) | ADENO | 0.96502 | 0.03498 | ADENO |
CL2001041708AA (testset) | ADENO | 0.96983 | 0.03017 | ADENO |
CL2001041711AA (testset) | ADENO | 0.94697 | 0.05303 | ADENO |
CL2001041716AA (testset) | ADENO | 0.89722 | 0.10278 | ADENO |
CL2001042501AA (testset) | other | 0.03091 | 0.96909 | other |
CL2001042505AA (testset) | ADENO | 0.87895 | 0.12105 | ADENO |
CL2001042506AA (testset) | ADENO | 0.7988 | 0.2012 | ADENO |