Total number of samples: | 203 |
---|---|
Training samples: | 136 ( 93 from ADENO, 43 from other ) |
Test samples: | 67 ( 46 from ADENO, 21 from other ) |
Focus on class: | ADENO |
Data frm chip: | hgu95av2 |
Start node: | GO:0008150 ( biological_process ) |
Chip annotations for: | hgu95av2 |
---|---|
Chip data package: | data package version 1.5.1 Mon May 10 11:12:58 2004 |
GO data package: | GO package version 1.5.1 Mon May 10 11:46:39 2004 |
Root node chosen: | GO:0008150 ( biological_process ) |
Number of probesets on the chip: | 12625 |
Probesets annotated below GO:0008150 : | 8679 |
Number of nodes with direct annotations: | 1359 |
Total number of nodes: | 2204 |
Number of samples: | 136 |
---|---|
Number of classes: | 2 |
Class weights: | 'ADENO': 0.684 'other': 0.316 |
Class prior: | 'ADENO':0.684 'other':0.316 |
Shrinkage candidates: | 0, 0.034, 0.068, 0.102, 0.137, 0.171, 0.205, 0.239, 0.273, 0.307, 0.342, 0.376, 0.41, 0.444, 0.478, 0.512, 0.547, 0.581, 0.615, 0.649, 0.683, 0.717, 0.751, 0.786, 0.82, 0.854, 0.888, 0.922, 0.956, 0.991 |
Root.error.rate | Root.performance | Mean.redundancy | Nodes | Genes | |
---|---|---|---|---|---|
0 | 0.08088 | 0.65353 | 0.94137 | 1244 | 8467 |
0.034 | 0.08088 | 0.63424 | 0.94789 | 1222 | 8463 |
0.068 | 0.05147 | 0.61318 | 0.96372 | 1136 | 8340 |
0.102 | 0.07353 | 0.58734 | 0.99091 | 994 | 8288 |
0.137 | 0.07353 | 0.56142 | 1.03197 | 842 | 8196 |
0.171 | 0.07353 | 0.53516 | 1.07676 | 721 | 8138 |
0.205 | 0.07353 | 0.51254 | 1.12393 | 628 | 8081 |
0.239 | 0.07353 | 0.4942 | 1.18611 | 535 | 7863 |
0.273 | 0.07353 | 0.47504 | 1.25112 | 470 | 7756 |
0.307 | 0.07353 | 0.45755 | 1.3358 | 401 | 7607 |
0.342 | 0.07353 | 0.44267 | 1.43547 | 347 | 7466 |
0.376 | 0.06618 | 0.42971 | 1.48362 | 318 | 7274 |
0.41 | 0.10294 | 0.41545 | 1.58136 | 277 | 7164 |
0.444 | 0.10294 | 0.40567 | 1.66907 | 244 | 7013 |
0.478 | 0.10294 | 0.39758 | 1.72166 | 223 | 6772 |
0.512 | 0.10294 | 0.38885 | 1.96876 | 180 | 6596 |
0.547 | 0.10294 | 0.38086 | 1.99214 | 174 | 6544 |
0.581 | 0.10294 | 0.3739 | 2.11434 | 156 | 6359 |
0.615 | 0.08088 | 0.36747 | 2.21452 | 130 | 5854 |
0.649 | 0.05882 | 0.35812 | 2.18792 | 116 | 5268 |
0.683 | 0.05882 | 0.3365 | 2.50304 | 75 | 4644 |
0.717 | 0.06618 | 0.3075 | 3.47239 | 48 | 3951 |
0.751 | 0.08824 | 0.29193 | 3.34618 | 44 | 3458 |
0.786 | 0.07353 | 0.28221 | 3.9376 | 32 | 2887 |
0.82 | 0.06618 | 0.2705 | 4.19286 | 29 | 2440 |
0.854 | 0.05882 | 0.26805 | 4.37322 | 27 | 2329 |
0.888 | 0.05882 | 0.28197 | 4.12074 | 22 | 2195 |
0.922 | 0.05147 | 0.27711 | 5.82593 | 6 | 329 |
0.956 | 0.04412 | 0.2674 | 5.9537 | 6 | 329 |
Number of classes: | 2 |
---|---|
Class weights: | 'ADENO': 0.684 'other': 0.316 |
Class prior: | 'ADENO':0.684 'other':0.316 |
Chosen shrinkage level: | 0.956 (by optimizing the root's error rate ) |
Number of nodes left | 6 |
Number of accessible genes | 329 |
Hover over a node to see its description, click on it to view its detailed results.
Number of samples: | 203 (139 from ADENO, 64 from other) |
---|---|
Test samples: | 67 (46 from ADENO, 21 from other) |
Classes: | ADENO, other |
Hover over a node description to see its ID, click on it to see detailed results.
GO:0008150 | biological_process | Biological Process |
GO:0003673 | Gene_Ontology (not in fit) |
---|
ID | Term | Weight |
---|---|---|
GO:0007610 | behavior | 0.00000 |
GO:0000004 | biological_process unknown | 0.00000 |
GO:0009987 | cellular process | 0.5 |
GO:0007275 | development | 0.00000 |
GO:0008371 | obsolete biological process | 0.00000 |
GO:0007582 | physiological process | 0.5 |
GO:0050789 | regulation of biological process | 0.00000 |
GO:0016032 | viral life cycle | 0.00000 |
Sensitivity | Specificity | |
---|---|---|
ADENO | 0.95699 | 0.93023 |
other | 0.93023 | 0.95699 |
Sensitivity | Specificity | |
---|---|---|
ADENO | 0.86957 | 0.85714 |
other | 0.85714 | 0.86957 |
Class | ADENO | other | Predictionn | |
---|---|---|---|---|
CL2001031606AA | other | 0.00122 | 0.99878 | other |
CL2001031607AA | other | 0.0017 | 0.9983 | other |
CL2001031608AA | ADENO | 0.97925 | 0.02075 | ADENO |
CL2001031609AA (testset) | other | 0 | 1 | other |
CL2001031611AA | ADENO | 0.80434 | 0.19566 | ADENO |
CL2001031612AA (testset) | ADENO | 0.93607 | 0.06393 | ADENO |
CL2001031613AA | ADENO | 0.99906 | 0.00094 | ADENO |
CL2001031615AA | ADENO | 0.99639 | 0.00361 | ADENO |
CL2001031616AA | ADENO | 0.99461 | 0.00539 | ADENO |
CL2001031618AA | ADENO | 0.9994 | 6e-04 | ADENO |
CL2001031620AA (testset) | other | 0.12766 | 0.87234 | other |
CL2001031621AA | other | 0.02447 | 0.97553 | other |
CL2001031622AA | ADENO | 0.0537 | 0.9463 | other |
CL2001031625AA (testset) | ADENO | 0.99995 | 5e-05 | ADENO |
CL2001031627AA | ADENO | 0.99643 | 0.00357 | ADENO |
CL2001031628AA | ADENO | 0.99998 | 2e-05 | ADENO |
CL2001031629AA | ADENO | 0.98076 | 0.01924 | ADENO |
CL2001031630AA (testset) | ADENO | 0.99997 | 3e-05 | ADENO |
CL2001031631AA (testset) | ADENO | 0.99998 | 2e-05 | ADENO |
CL2001031632AA (testset) | ADENO | 0.86603 | 0.13397 | ADENO |
CL2001031634AA (testset) | ADENO | 0.99741 | 0.00259 | ADENO |
CL2001031635AA | ADENO | 0.99766 | 0.00234 | ADENO |
CL2001031636AA | ADENO | 0.94181 | 0.05819 | ADENO |
CL2001032002AA | ADENO | 0.99974 | 0.00026 | ADENO |
CL2001032005AA (testset) | ADENO | 0.05752 | 0.94248 | other |
CL2001032008AA | ADENO | 0.99998 | 2e-05 | ADENO |
CL2001032009AA | ADENO | 0.99976 | 0.00024 | ADENO |
CL2001032010AA (testset) | other | 0.87914 | 0.12086 | ADENO |
CL2001032011AA | ADENO | 0.97717 | 0.02283 | ADENO |
CL2001032012AA (testset) | ADENO | 0.99966 | 0.00034 | ADENO |
CL2001032013AA (testset) | ADENO | 0.99553 | 0.00447 | ADENO |
CL2001032015AA (testset) | ADENO | 0.97872 | 0.02128 | ADENO |
CL2001032016AA | ADENO | 1 | 0 | ADENO |
CL2001032019AA | ADENO | 0.99999 | 1e-05 | ADENO |
CL2001032020AA | ADENO | 0.9998 | 2e-04 | ADENO |
CL2001032025AA | ADENO | 0.99755 | 0.00245 | ADENO |
CL2001032026AA | ADENO | 0.98001 | 0.01999 | ADENO |
CL2001032027AA | ADENO | 0.99754 | 0.00246 | ADENO |
CL2001032030AA | ADENO | 0.99002 | 0.00998 | ADENO |
CL2001032031AA | ADENO | 0.99702 | 0.00298 | ADENO |
CL2001032032AA (testset) | ADENO | 0.86755 | 0.13245 | ADENO |
CL2001032034AA | ADENO | 0.79906 | 0.20094 | ADENO |
CL2001032036AA | ADENO | 0.28661 | 0.71339 | other |
CL2001032041AA | other | 0.03579 | 0.96421 | other |
CL2001032043AA | other | 0.04665 | 0.95335 | other |
CL2001032044AA | other | 0 | 1 | other |
CL2001032045AA | other | 0.08882 | 0.91118 | other |
CL2001032046AA (testset) | other | 0.12512 | 0.87488 | other |
CL2001032101AA | other | 0 | 1 | other |
CL2001032102AA (testset) | other | 0.51928 | 0.48072 | ADENO |
CL2001032103AA | ADENO | 0.99318 | 0.00682 | ADENO |
CL2001032104AA | ADENO | 0.99998 | 2e-05 | ADENO |
CL2001032105AA (testset) | ADENO | 0.99508 | 0.00492 | ADENO |
CL2001032107AA (testset) | ADENO | 0.986 | 0.014 | ADENO |
CL2001032108AA | ADENO | 0.99982 | 0.00018 | ADENO |
CL2001032109AA (testset) | ADENO | 0.55627 | 0.44373 | ADENO |
CL2001032110AA | ADENO | 0.99787 | 0.00213 | ADENO |
CL2001032111AA | ADENO | 0.9943 | 0.0057 | ADENO |
CL2001032113AA (testset) | ADENO | 0.96382 | 0.03618 | ADENO |
CL2001032114AA | ADENO | 0.99978 | 0.00022 | ADENO |
CL2001032115AA | ADENO | 0.99952 | 0.00048 | ADENO |
CL2001032116AA (testset) | ADENO | 0.99994 | 6e-05 | ADENO |
CL2001032117AA | ADENO | 1 | 0 | ADENO |
CL2001032121AA | other | 0.00032 | 0.99968 | other |
CL2001032122AA (testset) | other | 0.42588 | 0.57412 | other |
CL2001032124AA | other | 0 | 1 | other |
CL2001032125AA | ADENO | 0.97273 | 0.02727 | ADENO |
CL2001032127AA (testset) | other | 0 | 1 | other |
CL2001032128AA | other | 0.02412 | 0.97588 | other |
CL2001032129AA | other | 0.00097 | 0.99903 | other |
CL2001032130AA | ADENO | 0.99991 | 9e-05 | ADENO |
CL2001032132AA (testset) | ADENO | 0.99601 | 0.00399 | ADENO |
CL2001032134AA (testset) | ADENO | 0.91786 | 0.08214 | ADENO |
CL2001032135AA | ADENO | 0.99988 | 0.00012 | ADENO |
CL2001032136AA | ADENO | 0.98128 | 0.01872 | ADENO |
CL2001032138AA | ADENO | 0.9997 | 3e-04 | ADENO |
CL2001032141AA (testset) | ADENO | 0.99999 | 1e-05 | ADENO |
CL2001032142AA (testset) | ADENO | 0.26259 | 0.73741 | other |
CL2001032144AA | other | 0.21102 | 0.78898 | other |
CL2001032145AA | other | 0 | 1 | other |
CL2001032147AA (testset) | other | 0.34089 | 0.65911 | other |
CL2001032149AA (testset) | ADENO | 0.93051 | 0.06949 | ADENO |
CL2001032151AA | other | 0 | 1 | other |
CL2001032152AA (testset) | other | 1e-05 | 0.99999 | other |
CL2001032153AA (testset) | other | 0.02458 | 0.97542 | other |
CL2001032155AA (testset) | ADENO | 0.25915 | 0.74085 | other |
CL2001032156AA | ADENO | 0.27862 | 0.72138 | other |
CL2001032202AA (testset) | other | 0.11772 | 0.88228 | other |
CL2001032206AA | other | 0.25432 | 0.74568 | other |
CL2001032207AA | other | 0.00448 | 0.99552 | other |
CL2001032209AA (testset) | other | 0.0285 | 0.9715 | other |
CL2001032210AA | other | 0 | 1 | other |
CL2001032211AA (testset) | ADENO | 0.99835 | 0.00165 | ADENO |
CL2001032212AA | ADENO | 0.99971 | 0.00029 | ADENO |
CL2001032213AA (testset) | ADENO | 0.10124 | 0.89876 | other |
CL2001032214AA | ADENO | 0.97518 | 0.02482 | ADENO |
CL2001032217AA (testset) | other | 0.00056 | 0.99944 | other |
CL2001032218AA | other | 0.02058 | 0.97942 | other |
CL2001032219AA | other | 0 | 1 | other |
CL2001032220AA | other | 0.46226 | 0.53774 | other |
CL2001032222AA | other | 0.39325 | 0.60675 | other |
CL2001032229AA (testset) | ADENO | 0.99899 | 0.00101 | ADENO |
CL2001032231AA | other | 0.2533 | 0.7467 | other |
CL2001032232AA | ADENO | 1 | 0 | ADENO |
CL2001032233AA | ADENO | 1 | 0 | ADENO |
CL2001032238AA | other | 0.00046 | 0.99954 | other |
CL2001032239AA (testset) | other | 0.00446 | 0.99554 | other |
CL2001032240AA (testset) | other | 0.28848 | 0.71152 | other |
CL2001032241AA | ADENO | 0.99953 | 0.00047 | ADENO |
CL2001032242AA (testset) | ADENO | 1 | 0 | ADENO |
CL2001032243AA (testset) | ADENO | 0.99998 | 2e-05 | ADENO |
CL2001032248AA | ADENO | 0.99995 | 5e-05 | ADENO |
CL2001032249AA | ADENO | 0.99973 | 0.00027 | ADENO |
CL2001032252AA | ADENO | 0.9956 | 0.0044 | ADENO |
CL2001032254AA | ADENO | 0.99965 | 0.00035 | ADENO |
CL2001032255AA (testset) | ADENO | 0.99954 | 0.00046 | ADENO |
CL2001032256AA | other | 0.93461 | 0.06539 | ADENO |
CL2001032259AA | ADENO | 0.99973 | 0.00027 | ADENO |
CL2001032260AA | other | 0.00076 | 0.99924 | other |
CL2001032301AA (testset) | ADENO | 0.26369 | 0.73631 | other |
CL2001032304AA (testset) | other | 0.78716 | 0.21284 | ADENO |
CL2001032305AA | other | 0.67311 | 0.32689 | ADENO |
CL2001032306AA (testset) | ADENO | 0.85037 | 0.14963 | ADENO |
CL2001032307AA | ADENO | 0.99943 | 0.00057 | ADENO |
CL2001032308AA (testset) | ADENO | 0.53947 | 0.46053 | ADENO |
CL2001032309AA | ADENO | 0.99854 | 0.00146 | ADENO |
CL2001032310AA | ADENO | 0.99638 | 0.00362 | ADENO |
CL2001032311AA | ADENO | 0.99937 | 0.00063 | ADENO |
CL2001032312AA | ADENO | 0.99977 | 0.00023 | ADENO |
CL2001032313AA | ADENO | 0.99555 | 0.00445 | ADENO |
CL2001032314AA | ADENO | 0.97649 | 0.02351 | ADENO |
CL2001032316AA | ADENO | 0.98891 | 0.01109 | ADENO |
CL2001032601AA | ADENO | 0.99415 | 0.00585 | ADENO |
CL2001032602AA | ADENO | 0.99995 | 5e-05 | ADENO |
CL2001032604AA | ADENO | 0.99999 | 1e-05 | ADENO |
CL2001032607AA (testset) | other | 0 | 1 | other |
CL2001032608AA | other | 0.00514 | 0.99486 | other |
CL2001032610AA (testset) | ADENO | 0.96683 | 0.03317 | ADENO |
CL2001032612AA | ADENO | 0.89362 | 0.10638 | ADENO |
CL2001032613AA | ADENO | 0.99942 | 0.00058 | ADENO |
CL2001032614AA (testset) | ADENO | 0.92916 | 0.07084 | ADENO |
CL2001032616AA | ADENO | 0.99874 | 0.00126 | ADENO |
CL2001032617AA (testset) | ADENO | 0.95618 | 0.04382 | ADENO |
CL2001032620AA (testset) | ADENO | 0.99994 | 6e-05 | ADENO |
CL2001032625AA | ADENO | 0.55607 | 0.44393 | ADENO |
CL2001032627AA (testset) | other | 0.01158 | 0.98842 | other |
CL2001032628AA | ADENO | 0.99939 | 0.00061 | ADENO |
CL2001032629AA (testset) | other | 1e-05 | 0.99999 | other |
CL2001032630AA | other | 1e-04 | 0.9999 | other |
CL2001032632AA | other | 0.00181 | 0.99819 | other |
CL2001032638AA | ADENO | 0.99367 | 0.00633 | ADENO |
CL2001032640AA | ADENO | 1 | 0 | ADENO |
CL2001032643AA | ADENO | 0.99904 | 0.00096 | ADENO |
CL2001032644AA | other | 0.00322 | 0.99678 | other |
CL2001032647AA (testset) | ADENO | 0.99925 | 0.00075 | ADENO |
CL2001032701AA | ADENO | 0.99995 | 5e-05 | ADENO |
CL2001032702AA | ADENO | 0.99987 | 0.00013 | ADENO |
CL2001032703AA (testset) | ADENO | 0.98465 | 0.01535 | ADENO |
CL2001032704AA | ADENO | 0.99238 | 0.00762 | ADENO |
CL2001032706AA | ADENO | 0.99979 | 0.00021 | ADENO |
CL2001032709AA | ADENO | 0.99993 | 7e-05 | ADENO |
CL2001032716AA | ADENO | 0.95997 | 0.04003 | ADENO |
CL2001032717AA | ADENO | 0.9976 | 0.0024 | ADENO |
CL2001032718AA | other | 0.02344 | 0.97656 | other |
CL2001032719AA | other | 0.01907 | 0.98093 | other |
CL2001032720AA | other | 0.00086 | 0.99914 | other |
CL2001032722AA | other | 0 | 1 | other |
CL2001032724AA | other | 0.79393 | 0.20607 | ADENO |
CL2001032725AA | other | 0.24511 | 0.75489 | other |
CL2001032727AA | other | 0.03995 | 0.96005 | other |
CL2001032729AA | ADENO | 0.99546 | 0.00454 | ADENO |
CL2001032730AA | ADENO | 0.9987 | 0.0013 | ADENO |
CL2001032732AA | other | 0.02411 | 0.97589 | other |
CL2001032733AA (testset) | ADENO | 0.99977 | 0.00023 | ADENO |
CL2001032738AA | ADENO | 0.99594 | 0.00406 | ADENO |
CL2001032742AA (testset) | ADENO | 0.43132 | 0.56868 | other |
CL2001032746AA | ADENO | 0.99005 | 0.00995 | ADENO |
CL2001032747AA (testset) | ADENO | 0.99985 | 0.00015 | ADENO |
CL2001032833AA | ADENO | 0.94873 | 0.05127 | ADENO |
CL2001032836AA | ADENO | 0.82069 | 0.17931 | ADENO |
CL2001032838AA | ADENO | 0.9998 | 2e-04 | ADENO |
CL2001032839AA | ADENO | 0.98733 | 0.01267 | ADENO |
CL2001032841AA (testset) | ADENO | 0.99932 | 0.00068 | ADENO |
CL2001032842AA (testset) | ADENO | 0.5417 | 0.4583 | ADENO |
CL2001032843AA (testset) | ADENO | 0.98217 | 0.01783 | ADENO |
CL2001032845AA | ADENO | 0.99884 | 0.00116 | ADENO |
CL2001032846AA | ADENO | 0.99998 | 2e-05 | ADENO |
CL2001032847AA (testset) | other | 0 | 1 | other |
CL2001032848AA | ADENO | 0.14026 | 0.85974 | other |
CL2001032850AA | other | 0 | 1 | other |
CL2001032853AA | other | 0.05351 | 0.94649 | other |
CL2001032854AA | other | 0.00013 | 0.99987 | other |
CL2001032856AA | ADENO | 0.998 | 0.002 | ADENO |
CL2001032857AA | ADENO | 0.99934 | 0.00066 | ADENO |
CL2001032860AA | other | 0 | 1 | other |
CL2001040305AA | ADENO | 0.99788 | 0.00212 | ADENO |
CL2001040306AA (testset) | ADENO | 0.99973 | 0.00027 | ADENO |
CL2001041708AA (testset) | ADENO | 0.99437 | 0.00563 | ADENO |
CL2001041711AA | ADENO | 0.9998 | 2e-04 | ADENO |
CL2001041716AA (testset) | ADENO | 0.99483 | 0.00517 | ADENO |
CL2001042501AA (testset) | other | 0 | 1 | other |
CL2001042505AA | ADENO | 0.97901 | 0.02099 | ADENO |
CL2001042506AA | ADENO | 0.84582 | 0.15418 | ADENO |