StAM - Structured Analysis of Microarrays

stam is an R/Bioconductor Package which implements our structured analysis of microarrays method. Thereby we link classification results to biologically focussed classifiers. The biological terms used are derived from the Gene Ontology. For further information see the StAM project page

Download

Download the tared and gzipped source file, which is compliant to Bioconductor. To run the package, you need R and at least packages Biobase, GO and annaffy from Bioconductor. Furthermore, meta data packages for all microarray you want to analyze are needed. To run the examples, you also need the package golubEsets.

→ the current source package
→ the current Windows binary

Direct installation from the CompDiag R/Bioconductor-repository

Start the R version where you want to install StAM. Use the following commands on the R prompt to install StAM directly from our repository:

library(reposTools)
z <- getReposEntry("http://compdiag.molgen.mpg.de/software/Rrepos")
install.packages2("stam", z)