Package: nem
Description: The package 'nem' allows to reconstruct features of
pathways from the nested structure of perturbation effects. It
takes as input (1.) a set of pathway components, which were
perturbed, and (2.) high-dimensional phenotypic readout of
these perturbations (e.g. gene expression or morphological
profiles). The output is a directed graph representing the
phenotypic hierarchy.
Version: 1.0.1
Author: Florian Markowetz, with contributions from Tim Beissbarth and
Claudio Lottaz
Maintainer: Florian Markowetz
Dependencies: R (>= 2.0), e1071 (>= 1.5), graph (>= 1.10), Rgraphviz (>=
1.10), RBGL (>= 1.8.1)
Suggests: Biobase (>= 1.10)
SystemRequirements: None
License: GPL version 2.0 or newer
URL: http://www.bioconductor.org
Source package download
Win32 package download