plotIsis {compdiagTools}R Documentation

Plot Clustered ISIS Results

Description

Plot a set of splits returned by ISIS clustered such that similar splits and samples which occur in similar splits are placed closely.

Usage

plotIsis(ires, data, score.weight = 3, horizontal = TRUE, main = NULL)

Arguments

ires Result returned by isis, a binary matrix with one row per split and one column per data point. The value at position i, j in this matrix associates the sample i to cluster ires[i,j] in split i. In addition, the last column holds DLD scores for each split.
data The matrix ISIS was run on, a matrix holding observations (samples) in columns and features (genes) in rows.
score.weight Exponent to weight split scores handed on to weightedHammingDist
horizontal passed on to bitmap
main title of the image.

Author(s)

Claudio Lottaz


[Package compdiagTools version 1.5.3 Index]