addonPreprocessing | Incremental Preprocessing |
boxplt.cpd | Boxplot of Expression Levels |
boxplt.plmset.cpd | Boxplot of Expression Levels |
consensusCluster | Consensus Clustering |
cpdTable | cpdTable - creates a HTML table from a data frame |
factorplot | Visualize factor like data |
geneImager | geneImager |
geneLister | geneLister - tool for pretty gene listing |
getGOTable | getGOTable function |
getPubmedEntry | Fetch a Pubmed Entry into a R List |
gokeggLister | Evaluate Overrepresentation of GO Terms and Pathways in Gene Lists |
greenred.colors | Green to red Color Gradiant |
image.consensusCluster | Illustrate Consensus Clustering |
makeCDNAlayout | layout creator |
MvsA.cpd | Rank-vs-Residual Plots |
optimTree | Optimal reordering of hclust objects |
optimTree.dendrogram | Change an hclust to a dendrogram object while keeping the given ordering |
optimTree.plot | Produces a clusterplot with optimal rearrangement of samples |
plotIsis | Plot Clustered ISIS Results |
randomDLDscores | ~~function to do ... ~~ |
removeRedundantSplits | Remove redundant isis splits |
runCDNAPreprocessing | Preprocessing of a CDNA Dataset |
runPreprocessing | Pre-processing of an Affymetrix Dataset |
weightedHammingDist | Distance to compare two splits |
wimage.cpd | Draw an Image of Residuals |
wimage.resids | Draw an Image of Residuals |