image.consensusCluster {compdiagTools}R Documentation

Illustrate Consensus Clustering

Description

This method depicts a consensus matrix computed by the consensusCluster method.

Usage

image.consensusCluster(x, main = NULL, sampleNames = FALSE, 
          outfile = NULL, pointsize = 8, res = 72, ...)

Arguments

x The object containing the consensus clustering result to be illustrated.
main The title for the image.
sampleNames logical, whether the names of the samples are to be shown to the right of the consensus matrix.
outfile The name of the ".png".file to be generated. The default is to use X11 and no file creation.
pointsize pointsize for the image.
res resolution for the bitmap if generated
... Further parameters passed to image.

Details

Shows the consensus matrix generated by consensus clustering. The scores shown reflect how consistently samples are clustered and how robust clusters are against resampling.

Author(s)

Claudio Lottaz

See Also

consensusCluster


[Package compdiagTools version 1.5.3 Index]