plotIsis {compdiagTools} | R Documentation |
Plot a set of splits returned by ISIS clustered such that similar splits and samples which occur in similar splits are placed closely.
plotIsis(ires, data, score.weight = 3, horizontal = TRUE, main = NULL)
ires |
Result returned by isis, a binary matrix with one row per split and one column per data point. The value at position i, j in this matrix associates the sample i to cluster ires[i,j] in split i. In addition, the last column holds DLD scores for each split. |
data |
The matrix ISIS was run on, a matrix holding observations (samples) in columns and features (genes) in rows. |
score.weight |
Exponent to weight split scores handed on to
weightedHammingDist |
horizontal |
passed on to bitmap |
main |
title of the image. |
Claudio Lottaz