makeCDNAlayout {compdiagTools} | R Documentation |
A script for creating userdefined layouts of CDNA datasets. The layoutfile is used in runCDNAPreprocessing.
data(makeCDNAlayout)
The format is: chr "makeCDNAlayout"
If SMD format of your dataset is not standart you have to create a userdefined layout for using the preprocessing. This script is an example for the Sorlie01 data set please do NOT modify this script, just copy and paste is to create your own script. To use the created layout file, fill in the name of your layout file (without suffix) in the CHIP slot of the project.config file. The suffix of the layout file must be '.Rda' like in this script. For further details read the commets in the script file. The layout file must be stored in the "rawdata" folder of your data set.