vsn.newpars {docval}R Documentation

New variance stabilizing transformation parameters

Description

Taking scale determining profile likelihood estimates mu and c this function determines the parameters to transform a new chip.

Usage

vsn.newpars(y, mu, c, pstart = NULL)

Arguments

y Vector of expression values
mu Vecotor of estimated mean expression values
c Estimated variance
pstart Starting point for optimization

Details

Optimization is performed using optim.

Value

A list with components

pars The transformation parameters
conv Convergence, as returned by optim

Author(s)

~~who you are~~

References

~put references to the literature/web site here ~


[Package docval version 1.0 Index]