normalize.AffyBatch.vsn.val {docval}R Documentation

Variance stabilizing normalization documented "by value"

Description

This function does the same as the normalize.AffyBatch.vsn in the vsn package, but implementing documentation by value.

Usage

normalize.AffyBatch.vsn.val(abatch, subsample = 20000, ...)

Arguments

abatch An object of type AffyBatch.
subsample The number of probes to be sampled for the fit of the transformation parameters.
... Further parameters for vsn.

Details

The function is virtually identical to the one provided in the vsn package. This version is different only in that it provides the TrimSelection and the corresponding profile likelihood estimates.

Value

An object of class AffyBatch.

Author(s)

References

~put references to the literature/web site here ~

Examples






[Package docval version 1.0 Index]