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If you also want to attend the 6th NGFN Meeting 10.11.-11.11. you also have to register there.
Registration is closed.
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| Monday, Nov 12 | ||
| 09.00-09.15 | Introduction | Roland Eils |
| 09.15-10.00 | Keynote "From proteomics to a whole cell model" | Rob Russel |
| 10.00-11.00 | Session Systems Biology | 20 min talks |
| Learning Nested Effect Models from RNAi Intervention Effects | Holger Fröhlich | |
| Reverse-Engineering of Gene Regulatory Networks in the Yeast Cell Cycle | Lars Kaderali | |
| Analyzing cellular signaling pathways with transitive approximations | Judy Jacob | |
| 11.00-11.30 | Coffee Break | |
| 11.30-12.30 | Session Systems Biology | 20 min talks |
| Gene Network Dynamics regulating Keratinocyte Migration | Axel Szabowski | |
| Analysis of gene expression data on metabolic networks | Anna-Lena Kranz | |
| Detecting common regulatory themes by analysis of miRNA and mRNA expression data | Benedikt Brors | |
| 12.30-14.00 | Lunch Break | |
| 14.00-15.00 | Keynote "Mass spectrometry informatics for Systems Biology" | Benno Schwikowski |
| 15.00-16.20 | Session Biomedical Applications | 20 min talks |
| Classification of patient samples using tbimass package | Marc Zapatka | |
| Expression and chromosomal clustering of tissue restricted antigens | Maria Dinkelacker | |
| Protein Functions via FunSimMat | Andreas Schlicker | |
| A Data Mining Solution for Biomedical Knowledge Discovery and Prediction | Sascha Losko | |
| 16.20-18.00 | Poster Session | |
| Tuesday, Nov 13 | ||
| 09.00-10.00 | Keynote "Microarrays, linear models and medical biology" | Gordon Smyth |
| 10.00-11.00 | Session Integrative Bioinformatics | 20 min talks |
| Extending pathways based on gene lists using InterPro domain signatures | Tim Beissbarth | |
| Sharing and meta-analysis of GeneChip expression profiles with SiPaGene for comparative analysis of biological systems | Thomas Häupl | |
| Hypergraph clustering identifies functional communities in protein-complex network | Fabian Theis | |
| 11.00-11.30 | Coffee Break | |
| 11.30-12.30 | Integrative Bioinformatics | 20 min talks |
| iCHIP: integrative bioinformatics database | Jürgen Eils | |
| The Jena Library of Biological Macromolecules | Thomas Koch | |
| GeKnow: System for Semantic Knowledge Integration for Systems Biolog | Karamfilka Nenova | |
| 12.30-14.00 | Lunch Break | |
| 14.00-14.45 | Keynote "Towards a systems approach to understanding breast cancer" | Michael Hallet |
| 14.45-15:00 | Closing remarks | Roland Eils |
| 15.00 | Workshop end | |
| 15.30-18.00 | Leica Scientific Forum | |
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Background
The SMP Bioinformatics within NGFN has developed methods for the analysis of biomedical data, often in close collaboration with biomedical groups. This covers steps from statistical data analysis, database development, software development and training to the functional analysis of gene groups and reconstruction of molecular networks. Our future aims go into the direction of Medical Systems Biology and to a full dynamical understanding of the underlying complex systems. In this workshop we would like to present our findings to the scientific community, along with a chance to meet and discuss and to have some outlook into the field by the presentations of some external high-profile keynote speakers.
Participants
| Gordon Smyth | WEHI | Australia | |
| Stefan Wörner | Applied Tumorbiology, Institute of Pathology | Germany | |
| Juby Jacob | University of Regensburg | Germany | |
| Julia Klopotek | febit biomed gmbh | Germany | |
| Markus Seiler | DKFZ | Germany | |
| Niels Grabe | University Hospital Heidelberg | Germany | |
| Benno Schwikowski | Institute Pasteur | Frankreich | |
| Razif R. Gabdoulline | IWR, University of Heidelberg | Germany | |
| Andreas Schlicker | Max Planck Institute for Informatics | Germany | |
| Karamfilka Nenova | MIPS/GSF | Germany | |
| Thomas Hielscher | DKFZ | germany | |
| Barakissa Tien | DKFZ | Deutschland | |
| Heiko Rosenfelder | DKFZ | Germany | |
| Michael Martinez | EML Research gGmbH | Germany | |
| Michael Hallett | McGill Centre for Bioinformatics | Canada | |
| Thomas Sütterlin | Institue for Medical Biometry and Informatics | Germany | |
| Thora Pommerencke | University hospital Heidelberg | Germany | |
| Andriy Kubarenko | DKFZ | Germany | |
| Benjamin Barnes | DKFZ | Germany | |
| Maik Lehmann | University of Heidelberg | Germany | |
| Felix Bonowski | Universität Heidelberg | Germany | |
| Tobias Meißner | Universitätsklinikum Heidelberg, Med. V | Germany | |
| Adriane Menssen | Charite | Germany | |
| Axel Szabowski | DKFZ / Heidelberg | Deutschland | |
| Zbigniew Rogon | DKFZ | Germany | |
| juergen eils | DKFZ | Germany | |
| Chris Lawerenz | DKFZ | Germany | |
| Tobias Bauer | dkfz Heidelberg | Germany | |
| Jan Eufinger | DKFZ Heidelberg | Germany | |
| Jianming Xu | DKFZ | Germany | |
| Daniel Maeda | DKFZ-ATV | TANZANIA | |
| Bernhard korn | DKFZ | Germany | |
| Christine Falk | DKFZ / NCT | Germany | |
| Thomas Wolf | DKFZ | Germany | |
| Svetlana Bulashevska | DKFZ | Germany | |
| Claus-W. von der Lieth | DKFZ | Germany | |
| Sascha Losko | Biomax | Deutschland | |
| Bernhard Heinzel | University Heidelberg | Germany | |
| Matthias Boeck | Viroquant | Germany | |
| Marco Binder | University Heidelberg | Deutschland | |
| Simone Hedtrich | DKFZ | Germany | |
| Rajiv Kumar | DKFZ | Germany | |
| Kannabiran Nandakumar | dkfz | Germany | |
| Margie Parthimos | DKFZ | Germany | |
| Yingzi Ge | DKFZ | Germany | |
| Daniel Maeda | DKFZ-ATV | TANZANIA | |
| Stefan Eichmüller | DKFZ | Germany | |
| Hauke Busch | DKFZ | Germany | |
| Rob Russel | EMBL | Deutschland | |
| Michael Hoehl | DKFZ | Germany | |
| Mara Brehm | DKFZ | Deutschland | |
| Gerrit Erdmann | DKFZ | Germany | |
| Amin Moghaddas Gholami | DKFZ | Germany | |
| haisen ta | bioquant univ heidelberg | Germany | |
| Anna-Lena Kranz | University of Heidelberg | Germany | |
| Volker Ast | DKFZ | Germany | |
| Kathleen Boerner | University of Heidelberg | Germany | |
| Jan Rodriguez Parkitna | DKFZ | Germany | |
| Jitao Zhang | Deutsches Krebsforschungzentrum | Deutschland | |
| Imad Lahdou | of Immunology, Dep: Transplantationsimmulogy | Germany | |
| Clarissa Gerhäuser | DKFZ | Germany | |
| Julia Hupfeld | University of Heidelberg | Germany | |
| Benedikt Brors | DKFZ | Germany | |
| Marc Zapatka | DKFZ | Germany | |
| Roland Eils | DKFZ | Germany | |
| Frank-Thomas Koch | Leibniz Institut für Altersforschung | Germany | |
| Nicola Cannata | University of Camerino | Italy | |
| Diana Perez Lopez | DKFZ | Germany | |
| Santosh Anand | TIGEM | ITALY | |
| Wiebke Werft | DKFZ | Germany | |
| Stefan Reckow | Max Planck Institute of Psychiatry | Germany | |
| Philipp Gormanns | Max-Planck-Institute of Psychiatry | Germany | |
| Lin Gan | University Hospital Aachen | Germany | |
| Christof von Kalle | Nationales Centrum für Tumorerkrankungen | Deutschland | |
| Astrid Riehl | DKFZ | Germany | |
| Bela Paizs | DKFZ | Germany | |
| Sonja Vorwerk | febit biotech | Germany | |
| Jochen Heß | DKFZ Heidelberg | Germany | |
| Markus Greiner | Universität des Saarlandes, Med. Biochemie | Germany | |
| Maria Dinkelacker | German Cancer Research Center | Germany | |
| Fabian Theis | CMB, Institute for Bioinformatics, GSF | Germany | |
| Thomas Haeupl | Charite | Germany | |
| Wang Dong | wroclaw uinversity of technology | poland | |
| Tim Beissbarth | DKFZ | Germany | |
| Daniel Haag | DKFZ | Germany | |
| Johanna Mazur | Bioquant / Uni Heidelberg | Germany | |
| Nurgazy Sulaimanov | Bioquant/Heidelberg University | Germany | |
| Bettina Knapp | University Tübingen | Germany | |
| Jürgen Dönitz | UMG Göttingen | Germany | |
| Holger Fröhlich | DKFZ | Germany | |
| Heike Pospisil | University of Hamburg | Germany | |
| Axel Klenk | Actelion Pharmaceuticals Ltd | Switzerland | |
| Angela Oberthür | BIOQUANT | Germany | |
| Vinayagam Arunachalam | Max Delbrueck Center for Molecular Medicine | Germany | |
| Apichat Suratanee | DKFZ | Germany | |
| Kitiporn Plaimas | DKFZ | Germany | |
| Waldemar Waldeck | DKFZ | Germany | |
| Axel Benner | DKFZ | Germany | |
| Lars Kaderali | Universitaet Heidelberg, Viroquant | Deutschland | |
| Klaus Braun | dkfz | Germany | |
| Ariane Trampe-Kieslich | Neuropathologie, Universitätsklinik Düsseldorf | Deutschland | |
| ovcabjebai ovcabjebai | http://pzwcibtvjlwu.com/ | USA | |
| Hans-Werner Mewes | Institut für Bioinformatik | Deutschland | |
| Petra Zipper | Institut für Neuropathologie | Germany | |
| Markus Ruschhaupt | German Cancer Research Center | Germany | |
| Kurt Fellenberg | DKFZ | Germany | |
| Rafael Queiroz | DKFZ / Heidelberg | Deutschland | |
Thank you for registering! If you will not be able to attend, please contact Tim Beißbarth to cancel your registration.
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How to find us
We meet Monday, November 12., at 9am at the big lecture hall at the DKFZ main building, The DKFZ lies on the science campus of the university of Heidelberg, Im Neuenheimer Feld 280.
The closest airport (by time, not by distance) is Frankfurt/Main. It is approximately 90km away, but has a nice high-speed train connection to Heidelberg via Mannheim. Travel by train is about 1 hour. Other airports would be Karlsruhe/Baden Airport and Stuttgart. Travel directions are at the DKFZ web site, too.
Accomodation
You will need to make your own accommodation arrangements.
Further information
Please contact Tim Beissbarth: t.beissbarth@dkfz.de.