If you also want to attend the 6th NGFN Meeting 10.11.-11.11. you also have to register there.
Registration is closed.
Monday, Nov 12 | ||
09.00-09.15 | Introduction | Roland Eils |
09.15-10.00 | Keynote "From proteomics to a whole cell model" | Rob Russel |
10.00-11.00 | Session Systems Biology | 20 min talks |
Learning Nested Effect Models from RNAi Intervention Effects | Holger Fröhlich | |
Reverse-Engineering of Gene Regulatory Networks in the Yeast Cell Cycle | Lars Kaderali | |
Analyzing cellular signaling pathways with transitive approximations | Judy Jacob | |
11.00-11.30 | Coffee Break | |
11.30-12.30 | Session Systems Biology | 20 min talks |
Gene Network Dynamics regulating Keratinocyte Migration | Axel Szabowski | |
Analysis of gene expression data on metabolic networks | Anna-Lena Kranz | |
Detecting common regulatory themes by analysis of miRNA and mRNA expression data | Benedikt Brors | |
12.30-14.00 | Lunch Break | |
14.00-15.00 | Keynote "Mass spectrometry informatics for Systems Biology" | Benno Schwikowski |
15.00-16.20 | Session Biomedical Applications | 20 min talks |
Classification of patient samples using tbimass package | Marc Zapatka | |
Expression and chromosomal clustering of tissue restricted antigens | Maria Dinkelacker | |
Protein Functions via FunSimMat | Andreas Schlicker | |
A Data Mining Solution for Biomedical Knowledge Discovery and Prediction | Sascha Losko | |
16.20-18.00 | Poster Session | |
Tuesday, Nov 13 | ||
09.00-10.00 | Keynote "Microarrays, linear models and medical biology" | Gordon Smyth |
10.00-11.00 | Session Integrative Bioinformatics | 20 min talks |
Extending pathways based on gene lists using InterPro domain signatures | Tim Beissbarth | |
Sharing and meta-analysis of GeneChip expression profiles with SiPaGene for comparative analysis of biological systems | Thomas Häupl | |
Hypergraph clustering identifies functional communities in protein-complex network | Fabian Theis | |
11.00-11.30 | Coffee Break | |
11.30-12.30 | Integrative Bioinformatics | 20 min talks |
iCHIP: integrative bioinformatics database | Jürgen Eils | |
The Jena Library of Biological Macromolecules | Thomas Koch | |
GeKnow: System for Semantic Knowledge Integration for Systems Biolog | Karamfilka Nenova | |
12.30-14.00 | Lunch Break | |
14.00-14.45 | Keynote "Towards a systems approach to understanding breast cancer" | Michael Hallet |
14.45-15:00 | Closing remarks | Roland Eils |
15.00 | Workshop end | |
15.30-18.00 | Leica Scientific Forum |
Background
The SMP Bioinformatics within NGFN has developed methods for the analysis of biomedical data, often in close collaboration with biomedical groups. This covers steps from statistical data analysis, database development, software development and training to the functional analysis of gene groups and reconstruction of molecular networks. Our future aims go into the direction of Medical Systems Biology and to a full dynamical understanding of the underlying complex systems. In this workshop we would like to present our findings to the scientific community, along with a chance to meet and discuss and to have some outlook into the field by the presentations of some external high-profile keynote speakers.
Participants
Stefan Wörner | Applied Tumorbiology, Institute of Pathology | Germany | |
Juby Jacob | University of Regensburg | Germany | |
Gordon Smyth | WEHI | Australia | |
Benno Schwikowski | Institute Pasteur | Frankreich | |
Julia Klopotek | febit biomed gmbh | Germany | |
Markus Seiler | DKFZ | Germany | |
Michael Martinez | EML Research gGmbH | Germany | |
Heiko Rosenfelder | DKFZ | Germany | |
Barakissa Tien | DKFZ | Deutschland | |
Thomas Hielscher | DKFZ | germany | |
Karamfilka Nenova | MIPS/GSF | Germany | |
Andreas Schlicker | Max Planck Institute for Informatics | Germany | |
Razif R. Gabdoulline | IWR, University of Heidelberg | Germany | |
Niels Grabe | University Hospital Heidelberg | Germany | |
Michael Hallett | McGill Centre for Bioinformatics | Canada | |
Tobias Meißner | Universitätsklinikum Heidelberg, Med. V | Germany | |
Felix Bonowski | Universität Heidelberg | Germany | |
Maik Lehmann | University of Heidelberg | Germany | |
Benjamin Barnes | DKFZ | Germany | |
Andriy Kubarenko | DKFZ | Germany | |
Thora Pommerencke | University hospital Heidelberg | Germany | |
Thomas Sütterlin | Institue for Medical Biometry and Informatics | Germany | |
Adriane Menssen | Charite | Germany | |
Axel Szabowski | DKFZ / Heidelberg | Deutschland | |
Claus-W. von der Lieth | DKFZ | Germany | |
Svetlana Bulashevska | DKFZ | Germany | |
Thomas Wolf | DKFZ | Germany | |
Christine Falk | DKFZ / NCT | Germany | |
Bernhard korn | DKFZ | Germany | |
Daniel Maeda | DKFZ-ATV | TANZANIA | |
Jianming Xu | DKFZ | Germany | |
Jan Eufinger | DKFZ Heidelberg | Germany | |
Tobias Bauer | dkfz Heidelberg | Germany | |
Chris Lawerenz | DKFZ | Germany | |
juergen eils | DKFZ | Germany | |
Zbigniew Rogon | DKFZ | Germany | |
Sascha Losko | Biomax | Deutschland | |
Hauke Busch | DKFZ | Germany | |
Stefan Eichmüller | DKFZ | Germany | |
Daniel Maeda | DKFZ-ATV | TANZANIA | |
Yingzi Ge | DKFZ | Germany | |
Margie Parthimos | DKFZ | Germany | |
Kannabiran Nandakumar | dkfz | Germany | |
Rajiv Kumar | DKFZ | Germany | |
Simone Hedtrich | DKFZ | Germany | |
Marco Binder | University Heidelberg | Deutschland | |
Matthias Boeck | Viroquant | Germany | |
Bernhard Heinzel | University Heidelberg | Germany | |
Rob Russel | EMBL | Deutschland | |
haisen ta | bioquant univ heidelberg | Germany | |
Amin Moghaddas Gholami | DKFZ | Germany | |
Gerrit Erdmann | DKFZ | Germany | |
Mara Brehm | DKFZ | Deutschland | |
Michael Hoehl | DKFZ | Germany | |
Imad Lahdou | of Immunology, Dep: Transplantationsimmulogy | Germany | |
Jitao Zhang | Deutsches Krebsforschungzentrum | Deutschland | |
Jan Rodriguez Parkitna | DKFZ | Germany | |
Kathleen Boerner | University of Heidelberg | Germany | |
Volker Ast | DKFZ | Germany | |
Anna-Lena Kranz | University of Heidelberg | Germany | |
Wiebke Werft | DKFZ | Germany | |
Santosh Anand | TIGEM | ITALY | |
Diana Perez Lopez | DKFZ | Germany | |
Frank-Thomas Koch | Leibniz Institut für Altersforschung | Germany | |
Nicola Cannata | University of Camerino | Italy | |
Roland Eils | DKFZ | Germany | |
Marc Zapatka | DKFZ | Germany | |
Benedikt Brors | DKFZ | Germany | |
Julia Hupfeld | University of Heidelberg | Germany | |
Clarissa Gerhäuser | DKFZ | Germany | |
Philipp Gormanns | Max-Planck-Institute of Psychiatry | Germany | |
Stefan Reckow | Max Planck Institute of Psychiatry | Germany | |
Hans-Werner Mewes | Institut für Bioinformatik | Deutschland | |
Bela Paizs | DKFZ | Germany | |
Christof von Kalle | Nationales Centrum für Tumorerkrankungen | Deutschland | |
Lin Gan | University Hospital Aachen | Germany | |
Astrid Riehl | DKFZ | Germany | |
Maria Dinkelacker | German Cancer Research Center | Germany | |
Markus Greiner | Universität des Saarlandes, Med. Biochemie | Germany | |
Jochen Heß | DKFZ Heidelberg | Germany | |
Sonja Vorwerk | febit biotech | Germany | |
Thomas Haeupl | Charite | Germany | |
Daniel Haag | DKFZ | Germany | |
Wang Dong | wroclaw uinversity of technology | poland | |
Fabian Theis | CMB, Institute for Bioinformatics, GSF | Germany | |
Tim Beissbarth | DKFZ | Germany | |
Bettina Knapp | University Tübingen | Germany | |
Nurgazy Sulaimanov | Bioquant/Heidelberg University | Germany | |
Johanna Mazur | Bioquant / Uni Heidelberg | Germany | |
Holger Fröhlich | DKFZ | Germany | |
Klaus Braun | dkfz | Germany | |
Axel Benner | DKFZ | Germany | |
Waldemar Waldeck | DKFZ | Germany | |
Kitiporn Plaimas | DKFZ | Germany | |
Apichat Suratanee | DKFZ | Germany | |
Vinayagam Arunachalam | Max Delbrueck Center for Molecular Medicine | Germany | |
Angela Oberthür | BIOQUANT | Germany | |
Axel Klenk | Actelion Pharmaceuticals Ltd | Switzerland | |
Heike Pospisil | University of Hamburg | Germany | |
Jürgen Dönitz | UMG Göttingen | Germany | |
Lars Kaderali | Universitaet Heidelberg, Viroquant | Deutschland | |
Rafael Queiroz | DKFZ / Heidelberg | Deutschland | |
Markus Ruschhaupt | German Cancer Research Center | Germany | |
Kurt Fellenberg | DKFZ | Germany | |
Petra Zipper | Institut für Neuropathologie | Germany | |
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Ariane Trampe-Kieslich | Neuropathologie, Universitätsklinik Düsseldorf | Deutschland | |
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Thank you for registering! If you will not be able to attend, please contact Tim Beißbarth to cancel your registration.
How to find us
We meet Monday, November 12., at 9am at the big lecture hall at the DKFZ main building, The DKFZ lies on the science campus of the university of Heidelberg, Im Neuenheimer Feld 280.
The closest airport (by time, not by distance) is Frankfurt/Main. It is approximately 90km away, but has a nice high-speed train connection to Heidelberg via Mannheim. Travel by train is about 1 hour. Other airports would be Karlsruhe/Baden Airport and Stuttgart. Travel directions are at the DKFZ web site, too.
Accomodation
You will need to make your own accommodation arrangements.
Further information
Please contact Tim Beissbarth: t.beissbarth@dkfz.de.