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If you also want to attend the 6th NGFN Meeting 10.11.-11.11. you also have to register there.
Registration is closed.
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| Monday, Nov 12 | ||
| 09.00-09.15 | Introduction | Roland Eils |
| 09.15-10.00 | Keynote "From proteomics to a whole cell model" | Rob Russel |
| 10.00-11.00 | Session Systems Biology | 20 min talks |
| Learning Nested Effect Models from RNAi Intervention Effects | Holger Fröhlich | |
| Reverse-Engineering of Gene Regulatory Networks in the Yeast Cell Cycle | Lars Kaderali | |
| Analyzing cellular signaling pathways with transitive approximations | Judy Jacob | |
| 11.00-11.30 | Coffee Break | |
| 11.30-12.30 | Session Systems Biology | 20 min talks |
| Gene Network Dynamics regulating Keratinocyte Migration | Axel Szabowski | |
| Analysis of gene expression data on metabolic networks | Anna-Lena Kranz | |
| Detecting common regulatory themes by analysis of miRNA and mRNA expression data | Benedikt Brors | |
| 12.30-14.00 | Lunch Break | |
| 14.00-15.00 | Keynote "Mass spectrometry informatics for Systems Biology" | Benno Schwikowski |
| 15.00-16.20 | Session Biomedical Applications | 20 min talks |
| Classification of patient samples using tbimass package | Marc Zapatka | |
| Expression and chromosomal clustering of tissue restricted antigens | Maria Dinkelacker | |
| Protein Functions via FunSimMat | Andreas Schlicker | |
| A Data Mining Solution for Biomedical Knowledge Discovery and Prediction | Sascha Losko | |
| 16.20-18.00 | Poster Session | |
| Tuesday, Nov 13 | ||
| 09.00-10.00 | Keynote "Microarrays, linear models and medical biology" | Gordon Smyth |
| 10.00-11.00 | Session Integrative Bioinformatics | 20 min talks |
| Extending pathways based on gene lists using InterPro domain signatures | Tim Beissbarth | |
| Sharing and meta-analysis of GeneChip expression profiles with SiPaGene for comparative analysis of biological systems | Thomas Häupl | |
| Hypergraph clustering identifies functional communities in protein-complex network | Fabian Theis | |
| 11.00-11.30 | Coffee Break | |
| 11.30-12.30 | Integrative Bioinformatics | 20 min talks |
| iCHIP: integrative bioinformatics database | Jürgen Eils | |
| The Jena Library of Biological Macromolecules | Thomas Koch | |
| GeKnow: System for Semantic Knowledge Integration for Systems Biolog | Karamfilka Nenova | |
| 12.30-14.00 | Lunch Break | |
| 14.00-14.45 | Keynote "Towards a systems approach to understanding breast cancer" | Michael Hallet |
| 14.45-15:00 | Closing remarks | Roland Eils |
| 15.00 | Workshop end | |
| 15.30-18.00 | Leica Scientific Forum | |
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Background
The SMP Bioinformatics within NGFN has developed methods for the analysis of biomedical data, often in close collaboration with biomedical groups. This covers steps from statistical data analysis, database development, software development and training to the functional analysis of gene groups and reconstruction of molecular networks. Our future aims go into the direction of Medical Systems Biology and to a full dynamical understanding of the underlying complex systems. In this workshop we would like to present our findings to the scientific community, along with a chance to meet and discuss and to have some outlook into the field by the presentations of some external high-profile keynote speakers.
Participants
| Benedikt Brors | DKFZ | Germany | |
| Marc Zapatka | DKFZ | Germany | |
| Roland Eils | DKFZ | Germany | |
| Wiebke Werft | DKFZ | Germany | |
| Santosh Anand | TIGEM | ITALY | |
| Lin Gan | University Hospital Aachen | Germany | |
| Jochen Heß | DKFZ Heidelberg | Germany | |
| Sonja Vorwerk | febit biotech | Germany | |
| Markus Greiner | Universität des Saarlandes, Med. Biochemie | Germany | |
| Nurgazy Sulaimanov | Bioquant/Heidelberg University | Germany | |
| Bettina Knapp | University Tübingen | Germany | |
| Johanna Mazur | Bioquant / Uni Heidelberg | Germany | |
| Axel Klenk | Actelion Pharmaceuticals Ltd | Switzerland | |
| Heike Pospisil | University of Hamburg | Germany | |
| Axel Benner | DKFZ | Germany | |
| juergen eils | DKFZ | Germany | |
| Chris Lawerenz | DKFZ | Germany | |
| Jan Eufinger | DKFZ Heidelberg | Germany | |
| Tobias Bauer | dkfz Heidelberg | Germany | |
| Zbigniew Rogon | DKFZ | Germany | |
| Bernhard korn | DKFZ | Germany | |
| Jianming Xu | DKFZ | Germany | |
| Daniel Maeda | DKFZ-ATV | TANZANIA | |
| Christine Falk | DKFZ / NCT | Germany | |
| Rajiv Kumar | DKFZ | Germany | |
| Simone Hedtrich | DKFZ | Germany | |
| Margie Parthimos | DKFZ | Germany | |
| Marco Binder | University Heidelberg | Deutschland | |
| Yingzi Ge | DKFZ | Germany | |
| Matthias Boeck | Viroquant | Germany | |
| Bernhard Heinzel | University Heidelberg | Germany | |
| Kannabiran Nandakumar | dkfz | Germany | |
| Stefan Eichmüller | DKFZ | Germany | |
| Daniel Maeda | DKFZ-ATV | TANZANIA | |
| Amin Moghaddas Gholami | DKFZ | Germany | |
| Gerrit Erdmann | DKFZ | Germany | |
| Mara Brehm | DKFZ | Deutschland | |
| Michael Hoehl | DKFZ | Germany | |
| Volker Ast | DKFZ | Germany | |
| haisen ta | bioquant univ heidelberg | Germany | |
| Anna-Lena Kranz | University of Heidelberg | Germany | |
| Jitao Zhang | Deutsches Krebsforschungzentrum | Deutschland | |
| Jan Rodriguez Parkitna | DKFZ | Germany | |
| Imad Lahdou | of Immunology, Dep: Transplantationsimmulogy | Germany | |
| Clarissa Gerhäuser | DKFZ | Germany | |
| Julia Hupfeld | University of Heidelberg | Germany | |
| Nicola Cannata | University of Camerino | Italy | |
| Diana Perez Lopez | DKFZ | Germany | |
| Frank-Thomas Koch | Leibniz Institut für Altersforschung | Germany | |
| Stefan Reckow | Max Planck Institute of Psychiatry | Germany | |
| Philipp Gormanns | Max-Planck-Institute of Psychiatry | Germany | |
| Lars Kaderali | Universitaet Heidelberg, Viroquant | Deutschland | |
| Holger Fröhlich | DKFZ | Germany | |
| Christof von Kalle | Nationales Centrum für Tumorerkrankungen | Deutschland | |
| Bela Paizs | DKFZ | Germany | |
| Maria Dinkelacker | German Cancer Research Center | Germany | |
| Wang Dong | wroclaw uinversity of technology | poland | |
| Fabian Theis | CMB, Institute for Bioinformatics, GSF | Germany | |
| Daniel Haag | DKFZ | Germany | |
| Jürgen Dönitz | UMG Göttingen | Germany | |
| Waldemar Waldeck | DKFZ | Germany | |
| Vinayagam Arunachalam | Max Delbrueck Center for Molecular Medicine | Germany | |
| Apichat Suratanee | DKFZ | Germany | |
| Kitiporn Plaimas | DKFZ | Germany | |
| Angela Oberthür | BIOQUANT | Germany | |
| Klaus Braun | dkfz | Germany | |
| Ariane Trampe-Kieslich | Neuropathologie, Universitätsklinik Düsseldorf | Deutschland | |
| Hans-Werner Mewes | Institut für Bioinformatik | Deutschland | |
| Petra Zipper | Institut für Neuropathologie | Germany | |
| Markus Ruschhaupt | German Cancer Research Center | Germany | |
| Kurt Fellenberg | DKFZ | Germany | |
| Rafael Queiroz | DKFZ / Heidelberg | Deutschland | |
| Stefan Wörner | Applied Tumorbiology, Institute of Pathology | Germany | |
| Astrid Riehl | DKFZ | Germany | |
| Julia Klopotek | febit biomed gmbh | Germany | |
| Markus Seiler | DKFZ | Germany | |
| Juby Jacob | University of Regensburg | Germany | |
| Tim Beissbarth | DKFZ | Germany | |
| Niels Grabe | University Hospital Heidelberg | Germany | |
| Andreas Schlicker | Max Planck Institute for Informatics | Germany | |
| Barakissa Tien | DKFZ | Deutschland | |
| Axel Szabowski | DKFZ / Heidelberg | Deutschland | |
| Michael Hallett | McGill Centre for Bioinformatics | Canada | |
| Rob Russel | EMBL | Deutschland | |
| Sascha Losko | Biomax | Deutschland | |
| Heiko Rosenfelder | DKFZ | Germany | |
| Thomas Hielscher | DKFZ | germany | |
| Razif R. Gabdoulline | IWR, University of Heidelberg | Germany | |
| Michael Martinez | EML Research gGmbH | Germany | |
| Karamfilka Nenova | MIPS/GSF | Germany | |
| Maik Lehmann | University of Heidelberg | Germany | |
| Benjamin Barnes | DKFZ | Germany | |
| Felix Bonowski | Universität Heidelberg | Germany | |
| Thomas Sütterlin | Institue for Medical Biometry and Informatics | Germany | |
| Thora Pommerencke | University hospital Heidelberg | Germany | |
| Andriy Kubarenko | DKFZ | Germany | |
| Adriane Menssen | Charite | Germany | |
| Benno Schwikowski | Institute Pasteur | Frankreich | |
| Gordon Smyth | WEHI | Australia | |
| Thomas Haeupl | Charite | Germany | |
| Tobias Meißner | Universitätsklinikum Heidelberg, Med. V | Germany | |
| Thomas Wolf | DKFZ | Germany | |
| Claus-W. von der Lieth | DKFZ | Germany | |
| Svetlana Bulashevska | DKFZ | Germany | |
| Hauke Busch | DKFZ | Germany | |
| Kathleen Boerner | University of Heidelberg | Germany |
Thank you for registering! If you will not be able to attend, please contact Tim Beißbarth to cancel your registration.
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How to find us
We meet Monday, November 12., at 9am at the big lecture hall at the DKFZ main building, The DKFZ lies on the science campus of the university of Heidelberg, Im Neuenheimer Feld 280.
The closest airport (by time, not by distance) is Frankfurt/Main. It is approximately 90km away, but has a nice high-speed train connection to Heidelberg via Mannheim. Travel by train is about 1 hour. Other airports would be Karlsruhe/Baden Airport and Stuttgart. Travel directions are at the DKFZ web site, too.
Accomodation
You will need to make your own accommodation arrangements.
Further information
Please contact Tim Beissbarth: t.beissbarth@dkfz.de.