SMP Bioinformatics

DKFZ NGFN Viroquant

NGFN SMP Bioinformatics workshop
"From Bioinformatics to Medical Systems Biology"

2007 November 12-13 in Heidelberg

If you also want to attend the 6th NGFN Meeting 10.11.-11.11. you also have to register there.

Registration is closed.

Preliminary Workshop program:
 Monday, Nov 12
09.00-09.15 Introduction Roland Eils
09.15-10.00 Keynote "From proteomics to a whole cell model" Rob Russel
10.00-11.00 Session Systems Biology 20 min talks
  Learning Nested Effect Models from RNAi Intervention Effects Holger Fröhlich
  Reverse-Engineering of Gene Regulatory Networks in the Yeast Cell Cycle Lars Kaderali
  Analyzing cellular signaling pathways with transitive approximations Judy Jacob
11.00-11.30 Coffee Break  
11.30-12.30 Session Systems Biology 20 min talks
  Gene Network Dynamics regulating Keratinocyte Migration Axel Szabowski
  Analysis of gene expression data on metabolic networks Anna-Lena Kranz
  Detecting common regulatory themes by analysis of miRNA and mRNA expression data Benedikt Brors
12.30-14.00 Lunch Break  
14.00-15.00 Keynote "Mass spectrometry informatics for Systems Biology" Benno Schwikowski
15.00-16.20 Session Biomedical Applications 20 min talks
  Classification of patient samples using tbimass package Marc Zapatka
  Expression and chromosomal clustering of tissue restricted antigens Maria Dinkelacker
  Protein Functions via FunSimMat Andreas Schlicker
  A Data Mining Solution for Biomedical Knowledge Discovery and Prediction Sascha Losko
16.20-18.00 Poster Session  
 Tuesday, Nov 13
09.00-10.00 Keynote "Microarrays, linear models and medical biology" Gordon Smyth
10.00-11.00 Session Integrative Bioinformatics 20 min talks
  Extending pathways based on gene lists using InterPro domain signatures Tim Beissbarth
  Sharing and meta-analysis of GeneChip expression profiles with SiPaGene for comparative analysis of biological systems Thomas Häupl
  Hypergraph clustering identifies functional communities in protein-complex network Fabian Theis
11.00-11.30 Coffee Break  
11.30-12.30 Integrative Bioinformatics 20 min talks
  iCHIP: integrative bioinformatics database Jürgen Eils
  The Jena Library of Biological Macromolecules Thomas Koch
  GeKnow: System for Semantic Knowledge Integration for Systems Biolog Karamfilka Nenova
12.30-14.00 Lunch Break  
14.00-14.45 Keynote "Towards a systems approach to understanding breast cancer" Michael Hallet
14.45-15:00 Closing remarks Roland Eils
15.00 Workshop end  
15.30-18.00 Leica Scientific Forum  

Background

The SMP Bioinformatics within NGFN has developed methods for the analysis of biomedical data, often in close collaboration with biomedical groups. This covers steps from statistical data analysis, database development, software development and training to the functional analysis of gene groups and reconstruction of molecular networks. Our future aims go into the direction of Medical Systems Biology and to a full dynamical understanding of the underlying complex systems. In this workshop we would like to present our findings to the scientific community, along with a chance to meet and discuss and to have some outlook into the field by the presentations of some external high-profile keynote speakers.

Participants

    
Stefan WörnerApplied Tumorbiology, Institute of PathologyGermany 
Juby JacobUniversity of RegensburgGermany 
Gordon SmythWEHIAustralia 
Benno SchwikowskiInstitute PasteurFrankreich 
Julia Klopotekfebit biomed gmbhGermany 
Markus SeilerDKFZGermany 
Michael MartinezEML Research gGmbHGermany 
Heiko RosenfelderDKFZGermany 
Barakissa TienDKFZDeutschland 
Thomas HielscherDKFZgermany 
Karamfilka NenovaMIPS/GSFGermany 
Andreas SchlickerMax Planck Institute for InformaticsGermany 
Razif R. GabdoullineIWR, University of HeidelbergGermany 
Niels GrabeUniversity Hospital HeidelbergGermany 
Michael HallettMcGill Centre for BioinformaticsCanada 
Tobias MeißnerUniversitätsklinikum Heidelberg, Med. VGermany 
Felix BonowskiUniversität HeidelbergGermany 
Maik LehmannUniversity of HeidelbergGermany 
Benjamin BarnesDKFZGermany 
Andriy KubarenkoDKFZGermany 
Thora PommerenckeUniversity hospital HeidelbergGermany 
Thomas SütterlinInstitue for Medical Biometry and InformaticsGermany 
Adriane MenssenChariteGermany 
Axel SzabowskiDKFZ / HeidelbergDeutschland 
Claus-W. von der LiethDKFZGermany 
Svetlana BulashevskaDKFZGermany 
Thomas WolfDKFZGermany 
Christine FalkDKFZ / NCTGermany 
Bernhard kornDKFZGermany 
Daniel MaedaDKFZ-ATVTANZANIA 
Jianming XuDKFZGermany 
Jan EufingerDKFZ HeidelbergGermany 
Tobias Bauerdkfz HeidelbergGermany 
Chris LawerenzDKFZGermany 
juergen eilsDKFZGermany 
Zbigniew RogonDKFZGermany 
Sascha LoskoBiomaxDeutschland 
Hauke BuschDKFZGermany 
Stefan EichmüllerDKFZGermany 
Daniel MaedaDKFZ-ATVTANZANIA 
Yingzi GeDKFZGermany 
Margie ParthimosDKFZGermany 
Kannabiran NandakumardkfzGermany 
Rajiv KumarDKFZGermany 
Simone HedtrichDKFZGermany 
Marco BinderUniversity HeidelbergDeutschland 
Matthias BoeckViroquantGermany 
Bernhard HeinzelUniversity HeidelbergGermany 
Rob RusselEMBLDeutschland 
haisen tabioquant univ heidelbergGermany 
Amin Moghaddas GholamiDKFZGermany 
Gerrit ErdmannDKFZGermany 
Mara BrehmDKFZDeutschland 
Michael HoehlDKFZGermany 
Imad Lahdouof Immunology, Dep: TransplantationsimmulogyGermany 
Jitao ZhangDeutsches KrebsforschungzentrumDeutschland 
Jan Rodriguez ParkitnaDKFZGermany 
Kathleen BoernerUniversity of HeidelbergGermany 
Volker AstDKFZGermany 
Anna-Lena KranzUniversity of HeidelbergGermany 
Wiebke WerftDKFZGermany 
Santosh AnandTIGEMITALY 
Diana Perez LopezDKFZGermany 
Frank-Thomas KochLeibniz Institut für AltersforschungGermany 
Nicola CannataUniversity of CamerinoItaly 
Roland EilsDKFZGermany 
Marc ZapatkaDKFZGermany 
Benedikt BrorsDKFZGermany 
Julia HupfeldUniversity of HeidelbergGermany 
Clarissa GerhäuserDKFZGermany 
Philipp GormannsMax-Planck-Institute of PsychiatryGermany 
Stefan ReckowMax Planck Institute of PsychiatryGermany 
Hans-Werner MewesInstitut für BioinformatikDeutschland 
Bela PaizsDKFZGermany 
Christof von KalleNationales Centrum für TumorerkrankungenDeutschland 
Lin GanUniversity Hospital AachenGermany 
Astrid RiehlDKFZGermany 
Maria DinkelackerGerman Cancer Research CenterGermany 
Markus GreinerUniversität des Saarlandes, Med. BiochemieGermany 
Jochen HeßDKFZ HeidelbergGermany 
Sonja Vorwerkfebit biotechGermany 
Thomas HaeuplChariteGermany 
Daniel HaagDKFZGermany 
Wang Dongwroclaw uinversity of technologypoland 
Fabian TheisCMB, Institute for Bioinformatics, GSFGermany 
Tim BeissbarthDKFZGermany 
Bettina KnappUniversity TübingenGermany 
Nurgazy SulaimanovBioquant/Heidelberg UniversityGermany 
Johanna MazurBioquant / Uni HeidelbergGermany 
Holger FröhlichDKFZGermany 
Klaus BraundkfzGermany 
Axel BennerDKFZGermany 
Waldemar WaldeckDKFZGermany 
Kitiporn PlaimasDKFZGermany 
Apichat SurataneeDKFZGermany 
Vinayagam ArunachalamMax Delbrueck Center for Molecular MedicineGermany 
Angela OberthürBIOQUANTGermany 
Axel KlenkActelion Pharmaceuticals LtdSwitzerland 
Heike PospisilUniversity of HamburgGermany 
Jürgen DönitzUMG GöttingenGermany 
Lars KaderaliUniversitaet Heidelberg, ViroquantDeutschland 
Rafael QueirozDKFZ / HeidelbergDeutschland 
Markus RuschhauptGerman Cancer Research CenterGermany 
Kurt FellenbergDKFZGermany 
Petra ZipperInstitut für NeuropathologieGermany 
ovcabjebai ovcabjebaihttp://pzwcibtvjlwu.com/USA 
Ariane Trampe-KieslichNeuropathologie, Universitätsklinik DüsseldorfDeutschland 
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Thank you for registering! If you will not be able to attend, please contact Tim Beißbarth to cancel your registration.

How to find us

We meet Monday, November 12., at 9am at the big lecture hall at the DKFZ main building, The DKFZ lies on the science campus of the university of Heidelberg, Im Neuenheimer Feld 280.

The closest airport (by time, not by distance) is Frankfurt/Main. It is approximately 90km away, but has a nice high-speed train connection to Heidelberg via Mannheim. Travel by train is about 1 hour. Other airports would be Karlsruhe/Baden Airport and Stuttgart. Travel directions are at the DKFZ web site, too.

Accomodation

You will need to make your own accommodation arrangements.

Further information

Please contact Tim Beissbarth: t.beissbarth@dkfz.de.