detectReplicas | detectReplicas |
exprSetArray | Class exprSetArray, an extension for cDNA data of the class exprSet, which a class for microarray data, and methods for processing them |
exprSetArray-class | Class exprSetArray, an extension for cDNA data of the class exprSet, which a class for microarray data, and methods for processing them |
fdc | FDC (false discovery count) |
initClasses | dummy to initialize classes, methods and generics |
initExprSetArray | dummy to initialize the class exprSetArray and its methods and generics |
interweave | interweave |
normalise | normalisation |
plotDataMatrix | Visualisation of a data matrix, e.g. a matrix of distance or similarity scores |
plotDistributions | Visualise Distributions |
processArrayData | processArrayData |
qualityDiagnostics | qualityDiagnostics |
qualityParameters | Calculation of quality characteristics for cDNA chip hybridisations |
readImageFiles | readImageFiles |
removeSpots | removeSpots |
rowFtests | F-test and t-test for rows of a matrix |
rowttests | F-test and t-test for rows of a matrix |
setZeroWeights | setZeroWeights |
simpleApply | simpleApply |
slideMerge | slideMerge |
spatialLayout | spatialLayout |
sqr | Square |
visualiseQualityParameters | visualiseQualityParameters |
writeToFile | writeToFile |
zzz | dummy to call .First.lib |