normalise {arrayMagic} | R Documentation |
arrayDataObject |
arrayDataObject contains a raw data object, i.e. a
three dimensional array (spots x channels x hybridisations),
where channels must be labbeled as channelNames |
channelNames |
character vector containing 4 items, by default: |
subtractBackground |
logical; default: FALSE |
method |
character string; default: "vsn" ;
possible: "vsn" , "loess" ,
"loessScale" , "loessQuantile" ,
"quantile" |
channelsSeparately |
apply single channel normalisation to each colour channel separately; not used by ratio based normalistion like lo(w)ess; default: FALSE |
hybridisationGroups |
list of vectors of indexes; normalise each group of hybridisation separately;default: missing |
object of class normaliseResult
Andreas Buness <a.buness@dkfz.de>