cDNA array data preprocessing and related utilities

[Package List] [Top]
detectReplicas detectReplicas
exprSetArray Class exprSetArray, an extension for cDNA data of the class exprSet, which a class for microarray data, and methods for processing them
exprSetArray-class Class exprSetArray, an extension for cDNA data of the class exprSet, which a class for microarray data, and methods for processing them
fdc FDC (false discovery count)
initClasses dummy to initialize classes, methods and generics
initExprSetArray dummy to initialize the class exprSetArray and its methods and generics
interweave interweave
normalise normalisation
plotDataMatrix Visualisation of a data matrix, e.g. a matrix of distance or similarity scores
plotDistributions Visualise Distributions
processArrayData processArrayData
qualityDiagnostics qualityDiagnostics
qualityParameters Calculation of quality characteristics for cDNA chip hybridisations
readImageFiles readImageFiles
removeSpots removeSpots
rowFtests F-test and t-test for rows of a matrix
rowttests F-test and t-test for rows of a matrix
setZeroWeights setZeroWeights
simpleApply simpleApply
slideMerge slideMerge
spatialLayout spatialLayout
sqr Square
visualiseQualityParameters visualiseQualityParameters
writeToFile writeToFile
zzz dummy to call .First.lib