readImageFiles {arrayMagic}R Documentation

readImageFiles

Description

All image analysis files are expected to correspond to the same type of microarray.

Arguments

fileNames vector of character strings; default missing
spotAnnoColumns vector of character strings; the column names of the image analysis data file, which are common to all microarrays; default missing
dataColumns named vector of character strings; the column names of the image analysis data file, which contain the raw intensities values of each spot; if supplied names(dataColumns) must contain: c("Cy3","Cy3Background","Cy5","Cy5Background"); default missing
type character string; possible values: "GenePix" and "ScanAlyze"; default: "GenePix"
verbose logical; default TRUE

Value

object of class arrayData

Author(s)

Andreas Buness <a.buness@dkfz.de>


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